Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   I3J23_RS01350 Genome accession   NZ_CP065159
Coordinates   220683..222173 (-) Length   496 a.a.
NCBI ID   WP_048367453.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 215683..227173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS01320 (I3J23_01320) gudB 215760..217034 (-) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -
  I3J23_RS01325 (I3J23_01325) - 217195..217779 (-) 585 WP_003153412.1 genetic competence negative regulator -
  I3J23_RS01330 (I3J23_01330) - 217931..218719 (-) 789 WP_003153411.1 metallophosphoesterase -
  I3J23_RS01335 (I3J23_01335) - 218806..219264 (-) 459 WP_014305320.1 YpbF family protein -
  I3J23_RS01340 (I3J23_01340) - 219333..220103 (-) 771 WP_046559846.1 LysM peptidoglycan-binding domain-containing protein -
  I3J23_RS01345 (I3J23_01345) - 220081..220668 (-) 588 WP_014305323.1 CPBP family intramembrane glutamic endopeptidase -
  I3J23_RS01350 (I3J23_01350) recS 220683..222173 (-) 1491 WP_048367453.1 ATP-dependent DNA helicase RecQ Machinery gene
  I3J23_RS01355 (I3J23_01355) - 222166..223224 (-) 1059 WP_014305325.1 helix-turn-helix domain-containing protein -
  I3J23_RS01360 (I3J23_01360) - 223493..223741 (+) 249 WP_003153403.1 ferredoxin -
  I3J23_RS01365 (I3J23_01365) - 223881..224453 (-) 573 WP_003153402.1 ECF transporter S component -
  I3J23_RS01370 (I3J23_01370) serA 224942..226519 (+) 1578 WP_003153401.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56042.15 Da        Isoelectric Point: 6.3781

>NTDB_id=445733 I3J23_RS01350 WP_048367453.1 220683..222173(-) (recS) [Bacillus amyloliquefaciens strain GXU-1]
MIELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNAEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTDDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KEQLQEELTYRVEKKLRKMNRFSALLERKECIRKALLSYFDESYEPEGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=445733 I3J23_RS01350 WP_048367453.1 220683..222173(-) (recS) [Bacillus amyloliquefaciens strain GXU-1]
ATGATTGAGCTGCATAAAGCTTTATCCAGGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAGGATACGATCGCCATGCTTCCGACCGGCGGGGGGAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCACCGCTTCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCAAAAGGA
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATTCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTACTGAACCGTTTGAAAAACGTTCCGGTCAGTTTATTTG
TTATTGATGAAGCTCATTGCATATCGGAGTGGGGACATGATTTCAGGCCTGATTATTCGAAGCTCGGGCCTTTCAGACAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACTGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAATATTCTCCTGGCGGCAGAACATTTGGCTGATAATG
CCGAAAAAATAAGCAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCCGGTATCATATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAATGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGGGA
CAGAATCTTGATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATCTGCTGTACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCTGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGATCTGGAAGGCATTTTGGCCGTCATACGGGATGCCGGTACGGATGATGAGCGAAAGCTTC
GGGACGTTCTGATCAATAAAGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGAAAAACCACA
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAACCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAAAAGCGCTGCTGTCTTATTTTGATGAATCGTATGAGCCTGAAGGCCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGGAAAAACATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGTTCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-178)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.347

100

0.683