Detailed information NTG0044573

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: O3O_RS05950
• Genome accession: NC_018661
• Coordinates: 1192321..1193313 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O104:H4 str. 2009EL-2071
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1187321..1198313

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O3O_RS05920 (O3O_19855)	ispD	1187382..1188092 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
O3O_RS05925 (O3O_19850)	ispF	1188092..1188571 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
O3O_RS05930 (O3O_19845)	truD	1188568..1189617 (+)	1050	WP_000568956.1	tRNA pseudouridine(13) synthase TruD	-
O3O_RS05935 (O3O_19840)	surE	1189598..1190359 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
O3O_RS05940 (O3O_19835)	pcm	1190353..1190979 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
O3O_RS05945 (O3O_19825)	nlpD	1191164..1192258 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
O3O_RS05950 (O3O_19820)	rpoS	1192321..1193313 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
O3O_RS05955 (O3O_19815)	-	1193434..1193841 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
O3O_RS05960 (O3O_19810)	-	1193988..1194581 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
O3O_RS05965 (O3O_19805)	-	1194581..1196008 (+)	1428	WP_000863197.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
O3O_RS05970 (O3O_19800)	-	1196019..1196255 (+)	237	WP_000562990.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
O3O_RS05975 (O3O_19795)	ygbN	1196295..1197659 (-)	1365	WP_000104428.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=44573 O3O_RS05950 WP_000081550.1 1192321..1193313(+) (rpoS) [Escherichia coli O104:H4 str. 2009EL-2071]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=44573 O3O_RS05950 WP_000081550.1 1192321..1193313(+) (rpoS) [Escherichia coli O104:H4 str. 2009EL-2071]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715