Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HPS43_RS10875 Genome accession   NZ_CP053618
Coordinates   2309952..2311397 (+) Length   481 a.a.
NCBI ID   WP_173010659.1    Uniprot ID   -
Organism   Achromobacter xylosoxidans strain GN008     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2304952..2316397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPS43_RS10860 (HPS43_10875) leuA 2306034..2307743 (-) 1710 WP_006386984.1 2-isopropylmalate synthase -
  HPS43_RS10865 (HPS43_10880) - 2308134..2309111 (-) 978 WP_006386985.1 tripartite tricarboxylate transporter substrate binding protein -
  HPS43_RS10870 (HPS43_10885) - 2309303..2309953 (-) 651 WP_054440138.1 hypothetical protein -
  HPS43_RS10875 (HPS43_10890) rpoN/rpoN1 2309952..2311397 (+) 1446 WP_173010659.1 RNA polymerase factor sigma-54 Machinery gene
  HPS43_RS10880 (HPS43_10895) - 2311499..2311798 (+) 300 WP_006386990.1 bacterioferritin-associated ferredoxin -
  HPS43_RS10885 (HPS43_10900) - 2311768..2312688 (-) 921 WP_006386991.1 LysR substrate-binding domain-containing protein -
  HPS43_RS10890 (HPS43_10905) - 2312802..2313716 (+) 915 WP_053497294.1 DMT family transporter -
  HPS43_RS10895 (HPS43_10910) bfr 2314141..2314617 (+) 477 WP_006386993.1 bacterioferritin -
  HPS43_RS10900 (HPS43_10915) - 2314702..2315400 (-) 699 WP_026384932.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52479.88 Da        Isoelectric Point: 4.8651

>NTDB_id=445627 HPS43_RS10875 WP_173010659.1 2309952..2311397(+) (rpoN/rpoN1) [Achromobacter xylosoxidans strain GN008]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLELEAEISQVLADNPLLERDDEPASVETQAESERESSVQDDEP
APERDAPVEEMPGSGGVYPDDDSSLPEAARPDTLREHLLGQLVLTRAAPRDAALAALLIDELDENGYLGSPLEEILGWLP
AEMEPDLDELRAALSLLQSFDPAGIGARDMSECLLLQLRNPDTARLPEAADPKALACARLVCAQHLALLATGNHARLCAA
VGCDEATLRAAHALILRLEPRPGRAWTVPAADYAVPDVIVRKTRRGWQVTLNSAAVPRLQINGLYAQMLANQKESAHAGL
QSQLQQAKWMIRNVEQRFDTILRVAQAIVDRQTAFFSQGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGAGVSTDGGDATSATAVQTFIRQMVAEENRAKPLSDSQIMEKLADQGIVIARRTVAKYREALRIAPAALRKAQAAA
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=445627 HPS43_RS10875 WP_173010659.1 2309952..2311397(+) (rpoN/rpoN1) [Achromobacter xylosoxidans strain GN008]
ATGCAAAATATTGTACCTATGACCCGTCCTATTTTAGAACTGCGGCCCGGCCAGCATCTGACGCTGACCCCTCAATTGCA
GCAATCGATCCGGTTGCTGCAGCTGTCCACGCTCGAGCTCGAGGCGGAAATCTCGCAAGTGCTCGCCGACAATCCGTTGC
TGGAACGCGACGATGAGCCTGCCTCCGTCGAGACGCAGGCCGAATCCGAGCGCGAGTCGTCGGTGCAGGACGACGAACCC
GCGCCCGAGCGCGACGCCCCGGTCGAGGAAATGCCGGGTTCGGGCGGGGTCTACCCCGATGATGATTCCAGCCTGCCCGA
GGCCGCCCGGCCCGATACCCTGCGCGAGCACCTGCTCGGGCAACTGGTGCTGACCCGCGCCGCGCCGCGCGACGCCGCGC
TGGCGGCGCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGGCTCGCCCCTGGAGGAAATCCTGGGCTGGCTGCCG
GCCGAGATGGAGCCGGACCTGGACGAGCTGCGCGCCGCGCTGTCGCTGCTGCAATCGTTCGACCCGGCCGGCATCGGCGC
GCGCGACATGTCCGAGTGCCTGCTGTTGCAATTGCGCAATCCCGACACGGCCCGGTTGCCCGAGGCCGCGGATCCCAAGG
CGCTGGCCTGCGCCCGCCTGGTCTGCGCCCAGCATCTGGCGCTGCTGGCCACCGGCAACCATGCCAGGCTGTGCGCCGCG
GTCGGTTGTGACGAGGCCACGCTGCGCGCGGCGCACGCCCTGATCCTGCGTCTGGAGCCCCGTCCGGGCCGCGCCTGGAC
GGTCCCGGCGGCCGATTACGCCGTGCCCGACGTCATCGTGCGCAAGACGCGCCGCGGCTGGCAGGTGACGCTCAACAGCG
CCGCCGTGCCGCGACTGCAGATCAATGGCCTGTACGCCCAAATGCTGGCCAACCAGAAGGAGTCGGCCCACGCCGGCTTG
CAGTCTCAGCTGCAACAGGCGAAATGGATGATCCGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGAGTGGCCCAGGC
CATTGTCGACCGCCAGACCGCCTTCTTCAGCCAGGGGCCGGCGGCCATGCGCCCGCTCATCCTCAAGGACATTGCCGGCG
AGCTGGGCCTGCATGAGTCCACCATTTCACGCGCCACGACACAGAAGTACATGCTCACTCCCTTCGGTACGCTGGAGCTC
AAGCGCTTCTTCGGGGCGGGGGTGTCGACCGATGGCGGCGACGCCACATCCGCCACGGCGGTGCAGACTTTCATCCGCCA
GATGGTGGCCGAGGAGAACCGGGCCAAGCCCCTGTCCGACAGCCAGATCATGGAAAAACTGGCCGACCAGGGCATCGTCA
TCGCCCGCAGGACGGTCGCGAAATACCGCGAGGCACTGCGGATCGCGCCGGCCGCGCTGCGCAAGGCGCAGGCCGCGGCG
CGGTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.505

100

0.52