Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HPS44_RS14320 Genome accession   NZ_CP053617
Coordinates   3160270..3161715 (+) Length   481 a.a.
NCBI ID   WP_047992431.1    Uniprot ID   -
Organism   Achromobacter xylosoxidans strain GN050     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3155270..3166715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPS44_RS14305 (HPS44_14310) leuA 3156352..3158061 (-) 1710 WP_173000430.1 2-isopropylmalate synthase -
  HPS44_RS14310 (HPS44_14315) - 3158452..3159429 (-) 978 WP_006386985.1 tripartite tricarboxylate transporter substrate binding protein -
  HPS44_RS14315 (HPS44_14320) - 3159621..3160271 (-) 651 WP_070782163.1 hypothetical protein -
  HPS44_RS14320 (HPS44_14325) rpoN/rpoN1 3160270..3161715 (+) 1446 WP_047992431.1 RNA polymerase factor sigma-54 Machinery gene
  HPS44_RS14325 (HPS44_14330) - 3161809..3162015 (+) 207 WP_020925646.1 hypothetical protein -
  HPS44_RS14330 (HPS44_14335) - 3162084..3162362 (+) 279 WP_026384933.1 type II toxin-antitoxin system RelE/ParE family toxin -
  HPS44_RS14335 (HPS44_14340) - 3162541..3162840 (+) 300 WP_006386990.1 bacterioferritin-associated ferredoxin -
  HPS44_RS14340 (HPS44_14345) - 3162810..3163730 (-) 921 WP_173000447.1 LysR substrate-binding domain-containing protein -
  HPS44_RS14345 (HPS44_14350) - 3163844..3164758 (+) 915 WP_173000454.1 DMT family transporter -
  HPS44_RS14350 (HPS44_14355) bfr 3165183..3165659 (+) 477 WP_006386993.1 bacterioferritin -
  HPS44_RS14355 (HPS44_14360) - 3165744..3166430 (-) 687 WP_006386994.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52525.90 Da        Isoelectric Point: 4.8651

>NTDB_id=445615 HPS44_RS14320 WP_047992431.1 3160270..3161715(+) (rpoN/rpoN1) [Achromobacter xylosoxidans strain GN050]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLELEAEISQVLADNPLLERDDEPSSVETQAESERESSVQDDEP
APERDTPVEEMPGSGGVYPDDDSSLPEAARPDTLREHLLGQLVLTRAAPRDAALAALLIDELDENGYLGSPLEEILGWLP
AEMEPDLDELRAALSLLQSFDPAGIGARDMSECLLLQLRNPDTARLPEAADPKALACARLVCAQHLALLATGNHARLCAA
VGCDEATLRAAHALILRLEPRPGRAWTVPAADYAVPDVIVRKTRRGWQVTLNSAAVPRLQINGLYAQMLANQKESAHAGL
QSQLQQAKWMIRNVEQRFDTILRVAQAIVDRQTAFFSQGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGAGVSTDGGDATSATAVQTFIRQMVAEENRAKPLSDSQIMEKLADQGIVIARRTVAKYREALRIAPAALRKAQAAA
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=445615 HPS44_RS14320 WP_047992431.1 3160270..3161715(+) (rpoN/rpoN1) [Achromobacter xylosoxidans strain GN050]
ATGCAAAATATTGTACCTATGACCCGTCCTATTTTAGAACTGCGGCCCGGCCAGCATCTGACGCTGACCCCTCAATTGCA
GCAATCGATCCGGTTGCTGCAGCTGTCCACGCTCGAGCTCGAGGCGGAAATCTCGCAAGTGCTCGCCGACAATCCGTTGC
TGGAACGCGACGATGAGCCTTCGTCCGTCGAGACGCAGGCCGAATCCGAGCGCGAGTCGTCGGTGCAGGACGACGAACCC
GCGCCCGAGCGCGACACCCCGGTCGAGGAAATGCCGGGTTCGGGCGGGGTCTACCCCGATGATGATTCCAGTCTGCCCGA
GGCCGCCCGGCCCGATACCCTGCGCGAGCACCTGCTCGGGCAACTGGTGCTGACCCGCGCCGCGCCGCGCGACGCCGCGC
TGGCGGCGCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGGCTCGCCCCTGGAGGAAATCCTGGGCTGGCTGCCG
GCCGAGATGGAGCCGGACCTGGACGAGCTGCGCGCCGCGCTGTCGCTGCTGCAATCGTTCGACCCGGCCGGCATCGGCGC
GCGCGACATGTCCGAGTGCCTGCTGTTGCAATTGCGCAATCCCGACACGGCCCGGTTGCCCGAGGCCGCGGATCCCAAGG
CGCTGGCCTGCGCCCGCCTGGTCTGCGCCCAGCATCTGGCGCTGTTGGCCACCGGCAACCATGCCAGGCTGTGCGCCGCG
GTCGGTTGTGACGAGGCCACGCTGCGCGCGGCGCACGCCCTGATCCTGCGTCTGGAGCCCCGTCCGGGCCGCGCCTGGAC
GGTCCCGGCGGCCGATTACGCCGTACCCGACGTCATCGTGCGCAAGACGCGCCGCGGCTGGCAGGTGACGCTCAACAGCG
CCGCCGTGCCGCGACTGCAGATCAATGGCCTGTACGCCCAAATGCTGGCCAACCAGAAGGAGTCGGCCCACGCCGGCTTG
CAGTCTCAGCTGCAACAGGCGAAATGGATGATCCGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGAGTGGCCCAGGC
CATTGTCGACCGCCAGACCGCCTTCTTCAGCCAGGGGCCGGCGGCCATGCGCCCGCTCATCCTCAAGGACATTGCCGGCG
AGCTGGGCCTGCATGAGTCCACCATTTCACGCGCCACGACACAGAAGTACATGCTCACTCCCTTCGGTACGCTGGAGCTC
AAGCGTTTCTTCGGGGCGGGGGTGTCGACCGATGGCGGCGACGCCACATCCGCCACGGCGGTGCAGACCTTCATCCGCCA
GATGGTGGCCGAGGAGAACCGGGCCAAGCCGCTGTCCGACAGCCAGATCATGGAAAAACTGGCCGACCAGGGCATCGTCA
TCGCCCGCAGGACGGTCGCGAAATACCGCGAGGCACTGCGGATCGCGCCGGCCGCGCTGCGCAAGGCGCAGGCCGCGGCG
CGGTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.505

100

0.52