Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IVB58_RS08290 Genome accession   NZ_CP065051
Coordinates   1742722..1743357 (+) Length   211 a.a.
NCBI ID   WP_000264029.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2016GDAB1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1737722..1748357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVB58_RS08265 (IVB58_08240) - 1738562..1739575 (+) 1014 WP_001096106.1 phosphotransferase -
  IVB58_RS08270 (IVB58_08245) murU 1739575..1740264 (+) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  IVB58_RS08275 (IVB58_08250) rsmG 1740352..1740984 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  IVB58_RS08280 (IVB58_08255) - 1741006..1741788 (+) 783 WP_000057212.1 ParA family protein -
  IVB58_RS08285 (IVB58_08260) - 1741785..1742672 (+) 888 WP_000023428.1 ParB/RepB/Spo0J family partition protein -
  IVB58_RS08290 (IVB58_08265) exbB 1742722..1743357 (+) 636 WP_000264029.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IVB58_RS08295 (IVB58_08270) - 1743373..1743801 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  IVB58_RS08300 (IVB58_08275) msbA 1743798..1745525 (+) 1728 WP_001070731.1 lipid A export permease/ATP-binding protein MsbA -
  IVB58_RS08305 (IVB58_08280) lpxK 1745528..1746538 (+) 1011 WP_000050463.1 tetraacyldisaccharide 4'-kinase -
  IVB58_RS08310 (IVB58_08285) kdsB 1746548..1747309 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IVB58_RS08315 (IVB58_08290) - 1747321..1748301 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23170.04 Da        Isoelectric Point: 6.4861

>NTDB_id=445509 IVB58_RS08290 WP_000264029.1 1742722..1743357(+) (exbB) [Acinetobacter baumannii strain 2016GDAB1]
MWELVKAGGWLMLPLILCSILTAAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=445509 IVB58_RS08290 WP_000264029.1 1742722..1743357(+) (exbB) [Acinetobacter baumannii strain 2016GDAB1]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGCCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGACACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393