Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HO398_RS05015 Genome accession   NZ_CP053600
Coordinates   1027737..1028366 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Nico21(DE3)     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1022737..1033366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HO398_RS04995 (HO398_04995) ycbZ 1023138..1024898 (-) 1761 WP_000156531.1 AAA family ATPase -
  HO398_RS05000 (HO398_05000) matP 1025084..1025536 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HO398_RS05005 (HO398_05005) ompA 1025612..1026652 (-) 1041 WP_000750416.1 porin OmpA -
  HO398_RS05010 (HO398_05010) sulA 1027009..1027518 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HO398_RS05015 (HO398_05015) sxy/tfoX 1027737..1028366 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HO398_RS05020 (HO398_05020) yccS 1028329..1030491 (-) 2163 WP_000875061.1 YccS family putative transporter -
  HO398_RS05025 (HO398_05025) yccF 1030501..1030947 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HO398_RS05030 (HO398_05030) helD 1031070..1033124 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=445386 HO398_RS05015 WP_000839153.1 1027737..1028366(+) (sxy/tfoX) [Escherichia coli strain Nico21(DE3)]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=445386 HO398_RS05015 WP_000839153.1 1027737..1028366(+) (sxy/tfoX) [Escherichia coli strain Nico21(DE3)]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1