Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ICC24_RS04085 Genome accession   NZ_CP065029
Coordinates   823216..823932 (+) Length   238 a.a.
NCBI ID   WP_009329065.1    Uniprot ID   A0ABX3I5L7
Organism   Bacillus licheniformis strain LCDD6     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 818216..828932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICC24_RS04070 (ICC24_04065) - 818418..819830 (+) 1413 WP_003179741.1 alanine/glycine:cation symporter family protein -
  ICC24_RS04075 (ICC24_04070) treP 820020..821432 (+) 1413 WP_003179744.1 PTS system trehalose-specific EIIBC component -
  ICC24_RS04080 (ICC24_04075) treC 821506..823194 (+) 1689 WP_003179746.1 alpha,alpha-phosphotrehalase -
  ICC24_RS04085 (ICC24_04080) treR 823216..823932 (+) 717 WP_009329065.1 trehalose operon repressor Regulator
  ICC24_RS04090 (ICC24_04085) - 824039..824731 (+) 693 WP_003179750.1 N-acetyltransferase -
  ICC24_RS04095 (ICC24_04090) - 824858..827332 (+) 2475 WP_104408191.1 NTTRR-F1 domain -
  ICC24_RS04100 (ICC24_04095) - 827566..828822 (+) 1257 Protein_773 NTTRR-F1 domain -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27767.56 Da        Isoelectric Point: 5.8721

>NTDB_id=445355 ICC24_RS04085 WP_009329065.1 823216..823932(+) (treR) [Bacillus licheniformis strain LCDD6]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYFIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=445355 ICC24_RS04085 WP_009329065.1 823216..823932(+) (treR) [Bacillus licheniformis strain LCDD6]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATTTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.525

99.16

0.412