Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HO402_RS16390 Genome accession   NZ_CP053594
Coordinates   3408908..3409537 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain T7Express_Crystal     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3403908..3414537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HO402_RS16375 (HO402_16380) helD 3404150..3406204 (-) 2055 WP_001295354.1 DNA helicase IV -
  HO402_RS16380 (HO402_16385) yccF 3406327..3406773 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HO402_RS16385 (HO402_16390) yccS 3406783..3408945 (+) 2163 WP_000875061.1 YccS family putative transporter -
  HO402_RS16390 (HO402_16395) sxy/tfoX 3408908..3409537 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HO402_RS16395 (HO402_16400) sulA 3409756..3410265 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HO402_RS16400 (HO402_16405) ompA 3410622..3411662 (+) 1041 WP_000750416.1 porin OmpA -
  HO402_RS16405 (HO402_16410) matP 3411738..3412190 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HO402_RS16410 (HO402_16415) ycbZ 3412376..3414136 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=445337 HO402_RS16390 WP_000839153.1 3408908..3409537(-) (sxy/tfoX) [Escherichia coli strain T7Express_Crystal]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=445337 HO402_RS16390 WP_000839153.1 3408908..3409537(-) (sxy/tfoX) [Escherichia coli strain T7Express_Crystal]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1