Detailed information NTG0445305

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IPT86_RS18150
• Genome accession: NZ_CP064847
• Coordinates: 3746505..3747497 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 20
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3741505..3752497

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IPT86_RS18125 (IPT86_18125)	pphB	3742865..3743521 (+)	657	WP_075861750.1	protein-serine/threonine phosphatase	-
IPT86_RS18130 (IPT86_18130)	-	3743563..3743799 (-)	237	WP_000562981.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
IPT86_RS18135 (IPT86_18135)	-	3743810..3745237 (-)	1428	WP_000863203.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
IPT86_RS18140 (IPT86_18140)	-	3745237..3745830 (-)	594	WP_001237173.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
IPT86_RS18145 (IPT86_18145)	-	3745977..3746384 (+)	408	WP_001208071.1	MarR family transcriptional regulator	-
IPT86_RS18150 (IPT86_18150)	rpoS	3746505..3747497 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IPT86_RS18155 (IPT86_18155)	nlpD	3747560..3748654 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
IPT86_RS18160 (IPT86_18160)	pcm	3748839..3749465 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IPT86_RS18165 (IPT86_18165)	surE	3749459..3750220 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IPT86_RS18170 (IPT86_18170)	truD	3750201..3751250 (-)	1050	WP_075861751.1	tRNA pseudouridine(13) synthase TruD	-
IPT86_RS18175 (IPT86_18175)	ispF	3751247..3751726 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IPT86_RS18180 (IPT86_18180)	ispD	3751726..3752436 (-)	711	WP_106106817.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=445305 IPT86_RS18150 WP_000081550.1 3746505..3747497(-) (rpoS) [Escherichia coli strain 20]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=445305 IPT86_RS18150 WP_000081550.1 3746505..3747497(-) (rpoS) [Escherichia coli strain 20]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715