Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IPT86_RS08340 Genome accession   NZ_CP064847
Coordinates   1727254..1728681 (-) Length   475 a.a.
NCBI ID   WP_074184834.1    Uniprot ID   -
Organism   Escherichia coli strain 20     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1722254..1733681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPT86_RS08310 (IPT86_08310) yeeZ 1722309..1723133 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  IPT86_RS08315 (IPT86_08315) yeeY 1723179..1724108 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  IPT86_RS08320 (IPT86_08320) yoeI 1724323..1724385 (+) 63 WP_010723108.1 membrane protein YoeI -
  IPT86_RS08325 (IPT86_08325) plaP 1724375..1725733 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IPT86_RS08330 (IPT86_08330) tsuA 1725912..1726970 (+) 1059 WP_063624967.1 thiosulfate utilization transporter TsuA/YeeE -
  IPT86_RS08335 (IPT86_08335) tsuB 1726984..1727211 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IPT86_RS08340 (IPT86_08340) sbcB 1727254..1728681 (-) 1428 WP_074184834.1 exodeoxyribonuclease I Machinery gene
  IPT86_RS08345 (IPT86_08345) dacD 1728890..1730056 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IPT86_RS08350 (IPT86_08350) sbmC 1730175..1730648 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  IPT86_RS08355 (IPT86_08355) yeeA 1730846..1731904 (+) 1059 WP_001200888.1 FUSC family protein -
  IPT86_RS08360 (IPT86_08360) tmaR 1732076..1732405 (+) 330 WP_000450409.1 DUF496 family protein -
  IPT86_RS08365 (IPT86_08365) - 1732506..1732688 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  IPT86_RS08370 (IPT86_08370) - 1732742..1732888 (+) 147 Protein_1647 transposase domain-containing protein -
  IPT86_RS08375 (IPT86_08375) - 1733177..1733257 (-) 81 Protein_1648 hypothetical protein -
  IPT86_RS08380 (IPT86_08380) yeeW 1733303..1733497 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54527.84 Da        Isoelectric Point: 5.4720

>NTDB_id=445277 IPT86_RS08340 WP_074184834.1 1727254..1728681(-) (sbcB) [Escherichia coli strain 20]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGENAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=445277 IPT86_RS08340 WP_074184834.1 1727254..1728681(-) (sbcB) [Escherichia coli strain 20]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGAGAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCAGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583