Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HPG89_RS20385 Genome accession   NZ_CP053585
Coordinates   4330840..4331445 (+) Length   201 a.a.
NCBI ID   WP_001202379.1    Uniprot ID   A0A734HUC9
Organism   Salmonella enterica strain 2011K-1440     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4325840..4336445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPG89_RS20365 (HPG89_20370) - 4326235..4327995 (-) 1761 WP_023177834.1 Lon protease family protein -
  HPG89_RS20370 (HPG89_20375) matP 4328181..4328633 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  HPG89_RS20375 (HPG89_20380) ompA 4328705..4329757 (-) 1053 WP_023177836.1 porin OmpA -
  HPG89_RS20380 (HPG89_20385) sulA 4330114..4330623 (-) 510 WP_000288728.1 SOS-induced cell division inhibitor SulA -
  HPG89_RS20385 (HPG89_20390) sxy/tfoX 4330840..4331445 (+) 606 WP_001202379.1 TfoX/Sxy family DNA transformation protein Regulator
  HPG89_RS20390 (HPG89_20395) yccS 4331432..4333585 (-) 2154 WP_023177838.1 YccS family putative transporter -
  HPG89_RS20395 (HPG89_20400) - 4333604..4334050 (-) 447 WP_001261216.1 YccF domain-containing protein -
  HPG89_RS20400 (HPG89_20405) helD 4334174..4336228 (+) 2055 WP_171804555.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23160.85 Da        Isoelectric Point: 8.7403

>NTDB_id=445264 HPG89_RS20385 WP_001202379.1 4330840..4331445(+) (sxy/tfoX) [Salmonella enterica strain 2011K-1440]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRTLGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=445264 HPG89_RS20385 WP_001202379.1 4330840..4331445(+) (sxy/tfoX) [Salmonella enterica strain 2011K-1440]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTATTGTGTGAAGCATCCTCCCGTCTGGCTCACGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAACAACTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAACACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCACACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCGTTAGAAGGCGCAATTGTGGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A734HUC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.382

99.005

0.756