Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   LLDRC3_RS00470 Genome accession   NZ_CP064835
Coordinates   86325..86543 (+) Length   72 a.a.
NCBI ID   WP_010905100.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain DRC3     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 81325..91543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLDRC3_RS00440 (LLDRC3_0081) - 82412..83833 (+) 1422 WP_010905095.1 HlyD family secretion protein -
  LLDRC3_RS00445 (LLDRC3_0082) - 83927..84052 (+) 126 WP_021214955.1 lactococcin family bacteriocin -
  LLDRC3_RS00450 (LLDRC3_0083) - 84378..84746 (+) 369 WP_223848592.1 transporter -
  LLDRC3_RS00455 (LLDRC3_0084) - 84785..85441 (+) 657 WP_063283572.1 CPBP family intramembrane glutamic endopeptidase -
  LLDRC3_RS00460 (LLDRC3_0085) - 85544..85825 (-) 282 WP_010905098.1 hypothetical protein -
  LLDRC3_RS00465 (LLDRC3_0086) - 85835..86080 (-) 246 WP_194942581.1 hypothetical protein -
  LLDRC3_RS00470 (LLDRC3_0087) comB/nlmE 86325..86543 (+) 219 WP_010905100.1 hypothetical protein Regulator
  LLDRC3_RS00475 (LLDRC3_0088) - 86637..86774 (+) 138 WP_021214958.1 lactococcin family bacteriocin -
  LLDRC3_RS00480 (LLDRC3_0089) - 86789..87499 (+) 711 WP_063283332.1 CPBP family intramembrane glutamic endopeptidase -
  LLDRC3_RS00485 (LLDRC3_0090) - 87926..88378 (+) 453 WP_010905102.1 transporter -
  LLDRC3_RS00490 (LLDRC3_0091) - 88589..89251 (-) 663 WP_063283333.1 CPBP family intramembrane glutamic endopeptidase -
  LLDRC3_RS00500 (LLDRC3_0094) - 90699..91067 (+) 369 WP_010905106.1 hypothetical protein -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 8231.78 Da        Isoelectric Point: 10.5176

>NTDB_id=445169 LLDRC3_RS00470 WP_010905100.1 86325..86543(+) (comB/nlmE) [Lactococcus lactis subsp. lactis strain DRC3]
MKLTGIFLLFLIFKSFPTIFKEENAYKVSATTAINAKDLPNIRYGLQGKTVTIIGKKTYFNYFLDKIMGRTS

Nucleotide


Download         Length: 219 bp        

>NTDB_id=445169 LLDRC3_RS00470 WP_010905100.1 86325..86543(+) (comB/nlmE) [Lactococcus lactis subsp. lactis strain DRC3]
ATGAAATTGACGGGTATATTTCTTTTATTTTTAATTTTTAAATCTTTTCCTACTATCTTTAAAGAGGAAAATGCTTATAA
AGTTTCTGCGACAACCGCTATCAATGCAAAAGACCTCCCAAATATAAGGTATGGCTTGCAAGGAAAAACGGTGACCATTA
TTGGAAAGAAAACTTATTTCAATTACTTTTTAGATAAAATTATGGGGAGGACTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

46.429

77.778

0.361