Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HPB40_RS12040 Genome accession   NZ_CP053568
Coordinates   2559081..2559707 (+) Length   208 a.a.
NCBI ID   WP_013097255.1    Uniprot ID   A0A427KI93
Organism   Enterobacter cloacae strain MY490     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2554081..2564707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB40_RS12020 (HPB40_11975) - 2554481..2556241 (-) 1761 WP_013097259.1 Lon protease family protein -
  HPB40_RS12025 (HPB40_11980) matP 2556428..2556880 (+) 453 WP_013097258.1 macrodomain Ter protein MatP -
  HPB40_RS12030 (HPB40_11985) ompA 2556944..2557999 (-) 1056 WP_044158562.1 porin OmpA -
  HPB40_RS12035 (HPB40_11990) sulA 2558354..2558863 (-) 510 WP_013097256.1 SOS-induced cell division inhibitor SulA -
  HPB40_RS12040 (HPB40_11995) sxy/tfoX 2559081..2559707 (+) 627 WP_013097255.1 TfoX/Sxy family DNA transformation protein Regulator
  HPB40_RS12045 (HPB40_12000) yccS 2559664..2561826 (-) 2163 WP_013097254.1 YccS family putative transporter -
  HPB40_RS12050 (HPB40_12005) - 2561846..2562292 (-) 447 WP_013097253.1 YccF domain-containing protein -
  HPB40_RS12055 (HPB40_12010) helD 2562415..2564469 (+) 2055 WP_040021610.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24000.57 Da        Isoelectric Point: 9.2254

>NTDB_id=445162 HPB40_RS12040 WP_013097255.1 2559081..2559707(+) (sxy/tfoX) [Enterobacter cloacae strain MY490]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYCVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSSYALNAARKERIQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=445162 HPB40_RS12040 WP_013097255.1 2559081..2559707(+) (sxy/tfoX) [Enterobacter cloacae strain MY490]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACCCTGGCCGTCGATGAGGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AGGAAAGTGCGAAGTACTGTGTAAAAAACGGATCCTCATTTTTGACCTTAATGAAACGCGGCCGGCCGATCCTTCTCAAC
TATTATCGTGTGGATGACGGTCTCTGGCAGGACAGGGAGCGGCTGCTTCAGCTTTCCTCTTACGCGCTTAATGCCGCGCG
TAAAGAGCGCATACAACGCTACCAGCGAAACCGGCTAAAGGATCTGCCCAACCTGACTTTTCAGCTGGAAGTCCTGCTCT
GTGAAGCCGGGATTACCAACGAAGATACCCTCCGGTCGCTGGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAGAAT
AAAGCGCTCAGTATTAAAGTACTGTTTGCCCTGGAAGGGGCGATTGAGGGCCTGCATGAAGCGGCACTCCCGGCGGAAAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCGCTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427KI93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567