Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   HNY42_RS12015 Genome accession   NZ_CP053557
Coordinates   2287529..2289331 (-) Length   600 a.a.
NCBI ID   WP_188004545.1    Uniprot ID   -
Organism   Exiguobacterium sp. Helios     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2282529..2294331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNY42_RS11990 (HNY42_11995) - 2283429..2284310 (-) 882 WP_131502686.1 RluA family pseudouridine synthase -
  HNY42_RS11995 (HNY42_12000) - 2284329..2285132 (-) 804 WP_114595374.1 NAD kinase -
  HNY42_RS12000 (HNY42_12005) - 2285143..2285793 (-) 651 WP_188004544.1 GTP pyrophosphokinase family protein -
  HNY42_RS12005 (HNY42_12010) - 2285899..2286474 (+) 576 WP_251138588.1 CYTH domain-containing protein -
  HNY42_RS12010 (HNY42_12015) - 2286567..2287358 (+) 792 WP_114595373.1 DsbA family protein -
  HNY42_RS12015 (HNY42_12020) pepF 2287529..2289331 (-) 1803 WP_188004545.1 oligoendopeptidase F Regulator
  HNY42_RS12020 (HNY42_12025) - 2289337..2290404 (-) 1068 WP_131502688.1 competence protein CoiA family protein -
  HNY42_RS12025 (HNY42_12030) cls 2290419..2291930 (-) 1512 WP_188004546.1 cardiolipin synthase -
  HNY42_RS12030 (HNY42_12035) - 2291992..2292714 (+) 723 WP_131972455.1 SDR family NAD(P)-dependent oxidoreductase -
  HNY42_RS12035 (HNY42_12040) mecA 2292787..2293413 (-) 627 WP_131502691.1 adaptor protein MecA -
  HNY42_RS12040 (HNY42_12045) spxA 2293583..2293981 (-) 399 WP_012370920.1 transcriptional regulator SpxA -
  HNY42_RS12045 (HNY42_12050) - 2294158..2294295 (-) 138 WP_012370921.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68868.29 Da        Isoelectric Point: 4.6090

>NTDB_id=445128 HNY42_RS12015 WP_188004545.1 2287529..2289331(-) (pepF) [Exiguobacterium sp. Helios]
MAEVLTRKDVKNEETWNLESIYETNEKWEEEFESVKAMLPLLVEYKGRLAQSDATLYEGLQLRDEISRRLHKLYTYAHMR
YDENTADSFYQAMNDRARTLASQIGATLAFMTPELLEVPEETIASYLDQNPDLALYRHAFDELNREREHVLSEAEEAILA
KAGEVLGQSGTTFGMLNNADMKFPKIKGEDGEEAELTHGRFITFMESKDRSVREDAFKAMYGTYSQYTNTLASTLAGSVK
KDNFYAEVRKFKTARESALHGNTIPEQVYDGLIEAVHEHLPLLHRYVALRKRILGVDELHMYDMYTPLVSEVEMKVTYEE
AKQLMVDGLAPLGPEYKHILEEGLAERWVDVRETRGKRSGAYSSGAYDTQPFILMNWQDNVNNLFTLAHEFGHSVHSYYT
RQNQPYAYGDYSIFVAEVASTTNEALLNDYLLKRVTDKNEKLYLLNNQLETFRGTLFRQTMFAEFEHQIHEAARLGQALT
PEFLTKTYYALNETYFGEGIVLDEEIGLEWARIPHFYYNYYVYQYATGISAAAALTSQILEEGEPAVERYINNFLKAGSS
DYPIEVLKAAGVDMTTKAPVEAALRQFERVLDEFEALLGE

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=445128 HNY42_RS12015 WP_188004545.1 2287529..2289331(-) (pepF) [Exiguobacterium sp. Helios]
ATGGCAGAAGTATTAACACGGAAAGACGTCAAGAACGAAGAAACGTGGAATTTAGAATCGATTTATGAAACGAACGAAAA
ATGGGAAGAGGAGTTTGAGTCAGTGAAAGCAATGCTTCCACTACTTGTCGAGTATAAAGGGCGTCTTGCACAGTCGGATG
CAACTTTATATGAAGGACTTCAACTTCGTGACGAAATCTCAAGACGGCTGCATAAGCTCTATACATATGCACATATGCGT
TACGATGAAAATACGGCGGATAGTTTTTATCAGGCGATGAATGACCGTGCCCGGACGCTGGCTTCGCAAATTGGTGCAAC
ATTAGCCTTCATGACACCTGAGCTGTTGGAAGTTCCAGAAGAGACGATCGCTTCGTACTTGGATCAGAATCCGGATCTTG
CGCTTTACCGTCATGCATTTGACGAGTTGAACCGTGAACGGGAACATGTCTTGTCAGAAGCGGAAGAGGCAATTCTCGCA
AAAGCAGGAGAAGTTCTCGGACAGTCGGGAACGACATTTGGCATGTTAAATAATGCAGATATGAAATTCCCGAAAATCAA
AGGTGAGGACGGGGAAGAGGCAGAACTGACGCACGGACGTTTCATCACGTTCATGGAGTCAAAAGATCGTTCTGTCCGCG
AGGACGCGTTTAAAGCGATGTATGGGACGTATAGTCAGTATACGAACACATTAGCCTCTACTTTAGCCGGTTCCGTCAAA
AAAGATAACTTCTATGCCGAGGTCCGGAAGTTCAAAACGGCCCGCGAATCAGCGTTACACGGAAACACGATTCCGGAGCA
GGTATATGACGGATTGATTGAAGCGGTTCACGAACACCTTCCGTTGTTACACCGTTATGTTGCTTTACGTAAACGGATTT
TAGGCGTCGATGAACTGCATATGTATGATATGTATACACCGCTCGTCAGTGAAGTCGAAATGAAGGTGACGTACGAAGAA
GCCAAACAGTTGATGGTGGATGGATTAGCACCACTAGGACCTGAATACAAACATATTCTTGAAGAAGGTCTTGCGGAACG
CTGGGTCGATGTCCGTGAAACACGTGGTAAGCGGAGTGGTGCCTATTCTTCAGGCGCATACGATACACAGCCGTTCATCT
TGATGAATTGGCAGGATAACGTCAACAACTTGTTTACATTAGCACACGAGTTTGGTCACTCCGTCCATAGCTACTATACA
CGTCAGAATCAACCATACGCTTATGGTGATTATTCAATCTTTGTCGCTGAGGTAGCATCGACGACAAACGAAGCACTCCT
AAATGATTACTTGTTGAAACGTGTGACGGATAAAAACGAGAAACTGTACCTCTTGAACAACCAATTGGAAACATTCCGTG
GAACGTTATTCCGTCAGACGATGTTTGCAGAGTTCGAACACCAGATTCATGAAGCGGCACGTCTTGGACAAGCGCTGACA
CCTGAATTCTTAACTAAGACGTACTATGCCTTAAATGAAACGTATTTCGGTGAGGGTATCGTGTTAGATGAAGAAATTGG
TTTGGAATGGGCACGGATTCCACACTTTTATTACAACTATTATGTCTATCAGTATGCGACAGGTATTTCTGCAGCAGCGG
CACTGACTTCGCAAATCTTAGAAGAAGGAGAGCCGGCGGTCGAGCGCTACATCAATAACTTCCTCAAAGCAGGATCAAGT
GATTATCCGATTGAAGTCCTCAAGGCGGCAGGCGTCGATATGACGACGAAAGCTCCGGTTGAAGCAGCCCTCCGTCAATT
CGAACGGGTACTCGATGAATTTGAAGCACTGCTCGGAGAATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-183)

Peptidase family M3 (Peptidase_M3)

(204-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.662

98.667

0.49