Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HNY42_RS06125 Genome accession   NZ_CP053557
Coordinates   1190478..1192184 (+) Length   568 a.a.
NCBI ID   WP_131503127.1    Uniprot ID   -
Organism   Exiguobacterium sp. Helios     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1185478..1197184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNY42_RS06100 (HNY42_06100) xseB 1185966..1186187 (+) 222 WP_026828907.1 exodeoxyribonuclease VII small subunit -
  HNY42_RS06105 (HNY42_06105) - 1186184..1187053 (+) 870 WP_131973181.1 polyprenyl synthetase family protein -
  HNY42_RS06110 (HNY42_06110) dxs 1187174..1189060 (+) 1887 WP_131503130.1 1-deoxy-D-xylulose-5-phosphate synthase -
  HNY42_RS06115 (HNY42_06115) - 1189067..1189873 (+) 807 WP_131503129.1 TlyA family RNA methyltransferase -
  HNY42_RS06120 (HNY42_06120) ahrC 1190016..1190465 (+) 450 WP_131503128.1 transcriptional regulator AhrC/ArgR -
  HNY42_RS06125 (HNY42_06125) recN 1190478..1192184 (+) 1707 WP_131503127.1 DNA repair protein RecN Machinery gene
  HNY42_RS06130 (HNY42_06130) spo0A 1192188..1192901 (+) 714 WP_131973180.1 sporulation transcription factor Spo0A -
  HNY42_RS06135 (HNY42_06135) - 1193768..1194022 (-) 255 WP_131503124.1 DUF2627 family protein -
  HNY42_RS06140 (HNY42_06140) - 1194144..1195799 (+) 1656 WP_131503123.1 sigma 54-interacting transcriptional regulator -
  HNY42_RS06145 (HNY42_06145) yqiS 1195945..1196865 (+) 921 WP_131973178.1 phosphate butyryltransferase -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64265.86 Da        Isoelectric Point: 4.7189

>NTDB_id=445122 HNY42_RS06125 WP_131503127.1 1190478..1192184(+) (recN) [Exiguobacterium sp. Helios]
MLAELSIKQFAIIDQLQIDFKKGMTVLTGETGAGKSIVLDAIGLLIGGRGSAEFVRYGEDKAELEGLFMIEDGHMAYSLA
EEYGIDMEDGMIILRRDLFASGKSVCRVNHKLVTLTILREFGRALVDLHGQHEHQHLMESTYHQTILDDFGHATIAPILE
RYQERFQQYEEKRDALQALAQSEQELAQRIDLLSFQTEEIDSAKLRKGEEEELLSERNRLANFEKLHASLSAAYDALHDE
RRGIDSVGDAMRELQQASSIDDEFSGQSDTLANAFYAMEEVGYAVRDQLETLEFDSNRLDEIELRLSVFQQLKRKYGATI
EEVIAYGKKIGVELDAMTNRDERIEKLKTEVEQLETELFEIGGELSQVRRKEAHLLGEAIHLELRQLYMEKARFEIRFLQ
DGKVPTLRRNGIDFVEFYIMTNAGEPFKSLGKVASGGELSRIMLGLKSIFSRSVGVASIIFDEVDTGVSGRVAQAMAEKI
YRLSIDSQVLCITHLPQVASIADQHLYIRKIEETDRTTTQVNVLTDSERGNELGRMISGTHMTDLTLRHAEELMEQAMHM
KESLKNGV

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=445122 HNY42_RS06125 WP_131503127.1 1190478..1192184(+) (recN) [Exiguobacterium sp. Helios]
ATGTTAGCTGAACTATCGATAAAACAATTTGCAATCATTGACCAGCTACAGATTGATTTTAAAAAAGGTATGACGGTCTT
GACCGGAGAGACAGGAGCCGGCAAATCGATCGTGCTGGATGCGATTGGATTACTGATCGGTGGTCGCGGGTCTGCTGAAT
TTGTTCGGTACGGTGAGGACAAGGCTGAATTAGAGGGTCTTTTCATGATTGAAGACGGTCATATGGCGTATTCGTTAGCC
GAAGAGTACGGGATCGACATGGAAGACGGCATGATTATTTTACGACGTGATTTGTTTGCTTCCGGAAAAAGTGTCTGTCG
CGTCAATCATAAATTAGTCACGTTGACGATTTTGCGGGAATTCGGACGGGCACTTGTCGATCTGCATGGTCAGCACGAAC
ATCAACATTTGATGGAAAGTACGTATCATCAAACGATTTTGGATGATTTCGGACATGCGACGATTGCTCCGATTCTCGAA
CGGTATCAAGAACGTTTTCAGCAGTATGAAGAAAAACGCGATGCCTTACAAGCGTTGGCGCAAAGCGAGCAGGAATTAGC
GCAACGCATCGATTTGCTGTCCTTTCAAACGGAAGAAATCGATAGTGCGAAACTCCGAAAAGGAGAAGAAGAAGAGTTGT
TGAGCGAACGAAACCGGTTAGCGAACTTCGAAAAGCTTCATGCTTCTCTCAGTGCGGCTTACGATGCGTTGCATGATGAA
CGACGCGGTATCGATTCCGTAGGAGACGCGATGCGTGAATTGCAGCAGGCTTCAAGTATCGATGACGAGTTTTCAGGTCA
AAGTGATACCCTGGCGAATGCATTTTATGCGATGGAGGAAGTCGGGTATGCGGTCCGTGATCAACTGGAGACATTAGAGT
TTGATTCGAATCGGCTTGATGAAATCGAACTCCGTCTATCCGTATTCCAACAGTTGAAACGGAAATACGGGGCGACGATT
GAAGAAGTCATCGCCTACGGGAAAAAAATCGGTGTGGAACTGGATGCGATGACAAACCGGGATGAGCGGATTGAGAAACT
GAAAACAGAAGTGGAACAGTTGGAAACGGAACTGTTCGAGATCGGTGGCGAGTTGTCCCAAGTCCGGAGAAAAGAAGCTC
ATCTTTTAGGTGAGGCGATTCATCTCGAGCTGCGTCAGTTGTATATGGAAAAAGCCCGGTTTGAAATTCGTTTCCTACAG
GACGGAAAGGTACCGACTTTACGTAGAAACGGAATCGATTTCGTTGAGTTCTATATCATGACGAATGCTGGAGAACCGTT
TAAATCACTTGGAAAAGTTGCTTCAGGCGGCGAATTGTCACGTATCATGCTTGGTCTGAAATCGATTTTCTCACGTTCAG
TCGGTGTAGCATCCATCATTTTTGATGAGGTGGATACAGGCGTATCAGGACGTGTCGCCCAAGCGATGGCGGAAAAGATT
TATCGTCTGTCGATCGACAGTCAAGTGTTGTGTATCACTCACTTGCCTCAAGTCGCTTCCATTGCGGATCAACATCTGTA
TATCCGGAAAATCGAAGAGACGGACCGGACGACGACACAGGTCAACGTTCTGACGGATTCGGAGCGCGGAAATGAACTGG
GACGGATGATTTCCGGTACACATATGACGGATTTGACGTTGCGTCATGCGGAAGAACTGATGGAACAGGCAATGCATATG
AAGGAATCGCTTAAAAATGGGGTGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.229

100

0.537