Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HNY42_RS01820 Genome accession   NZ_CP053557
Coordinates   344418..345794 (+) Length   458 a.a.
NCBI ID   WP_255508409.1    Uniprot ID   -
Organism   Exiguobacterium sp. Helios     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 339418..350794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNY42_RS01800 (HNY42_01800) - 339925..340380 (+) 456 WP_114597352.1 CtsR family transcriptional regulator -
  HNY42_RS01805 (HNY42_01805) - 340397..340825 (+) 429 WP_114597353.1 hypothetical protein -
  HNY42_RS01810 (HNY42_01810) - 340818..341891 (+) 1074 WP_188004980.1 protein arginine kinase -
  HNY42_RS01815 (HNY42_01815) clpC 341891..344338 (+) 2448 WP_131504426.1 ATP-dependent protease ATP-binding subunit ClpC -
  HNY42_RS01820 (HNY42_01820) radA 344418..345794 (+) 1377 WP_255508409.1 DNA repair protein RadA Machinery gene
  HNY42_RS01825 (HNY42_01825) - 345926..347014 (+) 1089 WP_188004981.1 PIN/TRAM domain-containing protein -
  HNY42_RS01830 (HNY42_01830) ispD 347073..347756 (+) 684 WP_131973667.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  HNY42_RS01835 (HNY42_01835) ispF 347759..348241 (+) 483 WP_188004982.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  HNY42_RS01840 (HNY42_01840) gltX 348287..349732 (+) 1446 WP_188004983.1 glutamate--tRNA ligase -
  HNY42_RS01845 (HNY42_01845) cysE 349997..350680 (+) 684 WP_034769411.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49925.53 Da        Isoelectric Point: 6.6520

>NTDB_id=445118 HNY42_RS01820 WP_255508409.1 344418..345794(+) (radA) [Exiguobacterium sp. Helios]
MAKIKTKFVCQSCGTESPKWMGRCSGCGEWNTMVEEVVEEKKARRGSAFVHTTTKQLKPERLSNILSQEESRVFTGSGEF
DRVLGGGIVPGSMVLVGGDPGIGKSTILLQTSARLAARGEKVLYISGEESLKQTKLRAERLGLPTQDLFVLSETDMNMIE
RVVDEENPGFLIIDSIQTVYIDEIQSAPGSVTQVRECTAMLMKIAKSRGIAIFIVGHVTKQGSIAGPRLLEHMVDAVLYF
EGERHHTFRILRAVKNRFGSTNEIGIFEMRESGLEEVLNPSEIFLEERTSGVSGSTIVASMEGTRTVLVELQALISPTSF
GNPRRMATGIDQNKVALLMAVLEKRSGLLLQTQDAYLKAAGGVKLDEPAIDLAICVAVASSFRDKPTRPTDVVIGEVGLT
GEVRRVSRIEQRVAEAAKLGFTRAIIPKNNLGGWTYPPGITVIGVESVDEALRETIPF

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=445118 HNY42_RS01820 WP_255508409.1 344418..345794(+) (radA) [Exiguobacterium sp. Helios]
GTGGCTAAAATAAAGACGAAATTTGTCTGCCAGAGTTGTGGTACGGAATCTCCCAAATGGATGGGACGCTGTTCCGGCTG
TGGCGAATGGAACACGATGGTCGAAGAAGTCGTTGAAGAGAAAAAAGCACGGCGCGGTTCTGCCTTCGTGCATACGACAA
CCAAACAATTAAAACCGGAACGCTTATCGAATATCTTGTCACAGGAAGAAAGCCGTGTCTTTACAGGCAGCGGTGAATTT
GACCGGGTCCTCGGTGGTGGAATCGTACCGGGCTCGATGGTTCTTGTCGGCGGCGATCCCGGAATCGGGAAGTCGACGAT
CTTGCTTCAAACCAGTGCCCGTCTTGCGGCGCGTGGAGAAAAAGTCCTGTACATTTCAGGGGAAGAATCGCTGAAACAAA
CGAAACTGCGGGCGGAACGCCTCGGATTACCGACACAGGACCTGTTTGTCTTGAGTGAGACAGACATGAACATGATCGAA
CGGGTCGTCGATGAAGAAAACCCGGGCTTTTTGATCATTGACTCCATTCAAACCGTGTATATCGATGAGATTCAGTCGGC
TCCGGGCAGTGTCACGCAAGTCCGGGAATGTACAGCGATGCTGATGAAAATCGCTAAGAGTCGTGGTATTGCAATCTTCA
TCGTCGGTCACGTAACCAAACAAGGATCGATTGCCGGACCGCGTTTACTTGAGCATATGGTAGATGCCGTTCTGTACTTT
GAAGGAGAACGCCACCACACGTTCCGGATTTTACGGGCGGTCAAAAACCGGTTCGGTTCGACGAATGAAATCGGTATTTT
TGAAATGCGTGAATCCGGTCTTGAAGAAGTCTTGAATCCATCGGAGATTTTCCTCGAAGAACGGACATCCGGTGTATCCG
GTTCGACCATCGTCGCCTCGATGGAGGGAACTCGGACAGTTCTTGTGGAACTGCAAGCATTGATTTCTCCGACATCGTTT
GGTAACCCGCGTCGTATGGCGACCGGGATTGATCAGAATAAAGTCGCTTTGCTGATGGCTGTTTTAGAAAAACGGTCGGG
CTTGTTGCTCCAGACGCAAGATGCGTATCTTAAGGCGGCAGGTGGAGTCAAACTTGATGAACCGGCCATCGATTTAGCAA
TTTGTGTCGCGGTCGCATCCAGTTTCCGCGATAAGCCGACCCGACCAACAGATGTCGTCATCGGCGAAGTTGGCCTGACG
GGCGAAGTCAGACGCGTCTCACGGATCGAACAACGGGTCGCGGAAGCGGCGAAGCTTGGTTTCACCCGTGCCATCATTCC
GAAAAACAATCTGGGGGGCTGGACATATCCACCCGGTATCACGGTAATCGGAGTCGAGAGTGTGGATGAAGCATTACGGG
AAACGATTCCGTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.026

99.563

0.727
  radA Streptococcus pneumoniae Rx1

62.061

99.563

0.618
  radA Streptococcus pneumoniae D39

62.061

99.563

0.618
  radA Streptococcus pneumoniae R6

62.061

99.563

0.618
  radA Streptococcus pneumoniae TIGR4

62.061

99.563

0.618
  radA Streptococcus mitis NCTC 12261

62.061

99.563

0.618
  radA Streptococcus mitis SK321

62.061

99.563

0.618