Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HND92_RS01765 Genome accession   NZ_CP053553
Coordinates   369487..371064 (+) Length   525 a.a.
NCBI ID   WP_172205568.1    Uniprot ID   A0A6M6II37
Organism   Diaphorobacter sp. JS3050     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 364487..376064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HND92_RS01740 (HND92_01740) argS 364774..366477 (+) 1704 WP_172205564.1 arginine--tRNA ligase -
  HND92_RS01745 (HND92_01745) - 366490..367116 (+) 627 WP_172205566.1 SPOR domain-containing protein -
  HND92_RS01750 (HND92_01750) - 367175..367825 (+) 651 WP_011803808.1 thiol:disulfide interchange protein DsbA/DsbL -
  HND92_RS01755 (HND92_01755) lptA 367999..368658 (+) 660 WP_041838776.1 lipopolysaccharide transport periplasmic protein LptA -
  HND92_RS01760 (HND92_01760) lptB 368682..369434 (+) 753 WP_088888621.1 LPS export ABC transporter ATP-binding protein -
  HND92_RS01765 (HND92_01765) rpoN/rpoN1 369487..371064 (+) 1578 WP_172205568.1 RNA polymerase factor sigma-54 Machinery gene
  HND92_RS01770 (HND92_01770) - 371068..371511 (+) 444 WP_172205570.1 thioesterase family protein -
  HND92_RS01775 (HND92_01775) - 371508..372821 (+) 1314 WP_172205572.1 class I SAM-dependent RNA methyltransferase -
  HND92_RS01780 (HND92_01780) - 372811..373296 (+) 486 WP_172205574.1 putative toxin-antitoxin system toxin component, PIN family -
  HND92_RS01785 (HND92_01785) - 373284..374585 (+) 1302 WP_172205576.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  HND92_RS01790 (HND92_01790) - 375067..375897 (+) 831 WP_135149295.1 YecA family protein -

Sequence

Protein


Download         Length: 525 a.a.        Molecular weight: 57360.44 Da        Isoelectric Point: 4.5471

>NTDB_id=445095 HND92_RS01765 WP_172205568.1 369487..371064(+) (rpoN/rpoN1) [Diaphorobacter sp. JS3050]
MKPGLSLRVSQHLALTPQLQQSIRLLQLSTLELAQEVEQMLDENPFLERTLEEAPREEFGLAQADAPVSEQDREAEDAIY
SGAVSAGQESATSQNDAETSTAETTAEPADWEGDGSVDLAPDDSEWGGDAPARNGAGAGSDDEVDATELARSQESLTAFL
HRQALALRLSELDMAALRFLIESLNDDGYLDEPLQDLAASLAGTEDPEQLDELVHRFTVALGLLQSLEPAGVGARGLAEC
LTLQLRAMDQDEEGDPDVIQAALAICGQPLDLLAKRDVRRLAQACGTSEERTRAAMALIARLEPRPGRRFADVDRNIIVP
DVIVKKTGRGGQQNFSVQLNPDVMPRLRVHDIYAGALRGGRGEGHQALQARLQEARWFIKNIQQRFDTILRVSRAIVERQ
KNFFVHGELAMRPLVLRDIADELGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTETGGNASSTAVRALIKQFIAAE
NPHKPLSDSQIAEMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1578 bp        

>NTDB_id=445095 HND92_RS01765 WP_172205568.1 369487..371064(+) (rpoN/rpoN1) [Diaphorobacter sp. JS3050]
ATGAAGCCCGGCCTGTCGCTGCGCGTCTCGCAGCACCTGGCGCTCACACCGCAGCTGCAGCAGTCGATCCGCCTGCTGCA
GCTGTCCACGCTGGAGCTGGCCCAGGAGGTCGAGCAGATGCTCGACGAGAACCCCTTCCTGGAGCGCACGCTGGAAGAGG
CCCCGCGCGAGGAGTTCGGCCTGGCCCAGGCCGATGCACCGGTGAGCGAGCAAGACCGCGAAGCCGAAGATGCTATTTAT
TCAGGAGCTGTCAGCGCAGGACAGGAAAGCGCTACAAGCCAAAATGATGCAGAAACCTCCACCGCCGAAACGACGGCCGA
ACCCGCGGACTGGGAAGGCGACGGCTCGGTAGACCTGGCGCCCGACGACAGCGAGTGGGGCGGCGACGCCCCGGCGCGCA
ACGGTGCCGGCGCGGGGAGCGACGACGAGGTGGACGCCACCGAGCTGGCCCGCAGCCAGGAGTCGCTCACGGCCTTCCTG
CACCGCCAGGCGCTGGCGCTGCGCCTGTCCGAGCTGGACATGGCCGCGCTGCGCTTCCTCATCGAATCGCTGAACGACGA
CGGCTACCTGGACGAGCCGCTGCAGGACCTGGCCGCCAGCCTGGCGGGCACCGAAGACCCCGAGCAACTCGATGAACTGG
TGCACCGTTTCACCGTGGCGCTGGGCCTGCTGCAAAGCCTGGAGCCCGCAGGCGTGGGCGCGCGCGGACTGGCCGAATGC
CTCACGCTGCAGTTGCGCGCGATGGACCAGGACGAAGAGGGCGACCCCGACGTGATCCAGGCCGCGCTGGCCATTTGCGG
CCAGCCGCTGGACCTGCTGGCCAAGCGCGACGTGCGCCGCCTGGCGCAGGCCTGCGGCACCAGCGAAGAGCGCACGCGTG
CCGCGATGGCCTTGATCGCACGGCTGGAGCCACGTCCGGGCAGGCGCTTTGCCGACGTGGACCGCAACATCATCGTGCCC
GACGTGATCGTCAAGAAAACTGGCCGCGGCGGACAGCAGAACTTCAGCGTGCAGCTCAACCCGGACGTGATGCCGCGTCT
GCGCGTGCACGACATCTACGCCGGTGCGTTGCGCGGCGGCCGTGGCGAAGGCCACCAGGCGCTGCAGGCACGGCTGCAGG
AGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGTTTTGACACCATCCTGCGCGTGTCGCGCGCCATCGTGGAGCGGCAG
AAGAACTTCTTCGTGCATGGCGAACTGGCCATGCGCCCGCTGGTGCTGCGCGACATTGCCGATGAACTGGGCCTGCACGA
GTCCACCATCAGCCGCGTGACCACCGCCAAGTACATGGCCACGCCGCAAGGCACCTACGAACTCAAGTATTTCTTCGGCT
CGGGGCTGGGCACCGAAACCGGCGGCAACGCCTCCAGTACGGCCGTGCGCGCGCTCATCAAGCAGTTCATCGCGGCCGAG
AACCCGCACAAGCCGCTGTCGGACAGCCAGATCGCCGAGATGCTCAAGGAGCAGGGCATTGAATGTGCGCGCCGCACCGT
GGCCAAATACCGTGAGGCGCTCAAGATCGCCCCGGCCAACCTCCGCAAGGCACTTTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(367-523)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(147-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M6II37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.955

100

0.531