Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   HOO69_RS12920 Genome accession   NZ_CP053541
Coordinates   2802868..2803875 (-) Length   335 a.a.
NCBI ID   WP_069667304.1    Uniprot ID   A0A178JCI4
Organism   Vibrio europaeus strain NPI-1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2797868..2808875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HOO69_RS12900 (HOO69_12940) - 2798024..2799622 (-) 1599 WP_171802188.1 BCCT family transporter -
  HOO69_RS12905 (HOO69_12950) hslU 2799900..2801234 (-) 1335 WP_069667307.1 HslU--HslV peptidase ATPase subunit -
  HOO69_RS12910 (HOO69_12955) hslV 2801285..2801827 (-) 543 WP_004743263.1 ATP-dependent protease subunit HslV -
  HOO69_RS12915 (HOO69_12960) ftsN 2802201..2802749 (-) 549 WP_171802189.1 cell division protein FtsN -
  HOO69_RS12920 (HOO69_12965) cytR 2802868..2803875 (-) 1008 WP_069667304.1 DNA-binding transcriptional regulator CytR Regulator
  HOO69_RS12925 (HOO69_12970) priA 2804233..2806434 (-) 2202 WP_171802190.1 primosomal protein N' -
  HOO69_RS12930 (HOO69_12975) rpmE 2806719..2806937 (+) 219 WP_004743259.1 50S ribosomal protein L31 -
  HOO69_RS12935 (HOO69_12980) - 2807194..2808471 (+) 1278 WP_171383602.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36902.57 Da        Isoelectric Point: 6.6018

>NTDB_id=445066 HOO69_RS12920 WP_069667304.1 2802868..2803875(-) (cytR) [Vibrio europaeus strain NPI-1]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIIAIIPDICDPYYTEIIRG
IEDAAMEHGYIVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRIAQISGPETATLCQFRHQGYQQALRRAGIAMNPNYCAIGDFTFEAGTKAIRQLLALPDAPTA
VFCHNDAMAIGVIQEAKKLGLRVPQDLSVVGFDDIHFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPRVL

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=445066 HOO69_RS12920 WP_069667304.1 2802868..2803875(-) (cytR) [Vibrio europaeus strain NPI-1]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTTTCAACAGCGACAGTGTCTAGAGCGCTAATGAATCCAGAAAA
GGTATCGTCATCGACAAGGAAAAGAGTCGAAGATGCTGTTTTAGAAGCTGGTTATTCACCAAACTCGTTGGCGCGCAACT
TGCGTCGTAACGAATCAAAAACAATCATCGCAATCATTCCAGATATTTGTGATCCCTACTACACCGAGATCATTCGCGGA
ATTGAAGATGCGGCAATGGAGCACGGATACATCGTTTTGCTTGGCGATAGTGGGCAGCAGAAGAAGCGCGAAAGCTCATT
TGTAAACCTAGTATTTACTAAGCAAGCGGATGGCATGTTGCTGCTTGGGACCGATCTTCCTTTTGACGTCAGTAAACCTG
AACAAAAGAACTTACCTCCTATGGTAATGGCTTGTGAGTTTGCTCCTGAGTTGGAGTTACCAACGGTACACATCGACAAC
CTGACTTCTGCATTTGAAGCGGTAAACTATCTAACACAGATGGGTCATAAACGTATTGCACAAATCTCAGGCCCTGAAAC
GGCTACCTTATGTCAGTTCCGTCATCAAGGTTATCAACAAGCCCTGCGACGTGCCGGAATCGCTATGAACCCGAATTATT
GCGCCATAGGTGATTTTACCTTTGAGGCCGGAACTAAAGCGATCCGCCAGCTTTTAGCTTTGCCAGATGCTCCGACAGCA
GTGTTCTGTCACAACGATGCCATGGCAATTGGTGTGATTCAAGAAGCGAAGAAACTAGGTTTGCGTGTTCCGCAAGACCT
ATCCGTTGTAGGATTTGATGATATTCACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAGCCTCGCTATG
AAATCGGCCGCCAAGCAATGCTCATGATGCTTGAGCTGCTACGTGGACATGATGTTCGCGCAGGGTCGAGATTGCTTGAA
ACCAAGCTGGTGGTACGTGAAAGCGCTGCGCCTCCAAGAGTGCTTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A178JCI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

92.47

99.104

0.916
  cytR Vibrio parahaemolyticus RIMD 2210633

88.589

99.403

0.881