Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HOO69_RS11730 Genome accession   NZ_CP053541
Coordinates   2558945..2559463 (-) Length   172 a.a.
NCBI ID   WP_069667479.1    Uniprot ID   A0A178JBA9
Organism   Vibrio europaeus strain NPI-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2553945..2564463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HOO69_RS11710 (HOO69_11750) - 2555851..2557113 (-) 1263 WP_171802093.1 HD-GYP domain-containing protein -
  HOO69_RS11715 (HOO69_11755) - 2557233..2557640 (-) 408 WP_004748178.1 VOC family protein -
  HOO69_RS11725 (HOO69_11765) - 2558403..2558879 (+) 477 WP_171802094.1 RDD family protein -
  HOO69_RS11730 (HOO69_11770) luxS 2558945..2559463 (-) 519 WP_069667479.1 S-ribosylhomocysteine lyase Regulator
  HOO69_RS11735 (HOO69_11775) - 2559488..2560087 (-) 600 WP_069667478.1 hypothetical protein -
  HOO69_RS11740 (HOO69_11780) gshA 2560097..2561665 (-) 1569 WP_069667477.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19030.77 Da        Isoelectric Point: 4.6153

>NTDB_id=445056 HOO69_RS11730 WP_069667479.1 2558945..2559463(-) (luxS) [Vibrio europaeus strain NPI-1]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRNHLNGDAVEIIDISP
MGCRTGFYMSLIGTPQEQQVADAWLSAMQDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAEAILAAGVSVNKNDELA
LPEEMLKELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=445056 HOO69_RS11730 WP_069667479.1 2558945..2559463(-) (luxS) [Vibrio europaeus strain NPI-1]
ATGCCGTTATTAGATAGTTTTACCGTAGACCACACAAGAATGAATGCACCTGCCGTCCGTGTAGCAAAAACCATGACGAC
ACCCAAAGGTGACACCATTACGGTATTTGACTTACGCTTTACCGCGCCAAATAAAGATATCTTGTCAGAAAGGGGTATTC
ATACTTTAGAGCACCTTTACGCTGGCTTTATGCGTAATCACTTGAATGGCGATGCGGTGGAGATTATCGATATCTCTCCA
ATGGGCTGTCGTACAGGCTTTTACATGAGCCTGATTGGTACGCCACAAGAGCAGCAAGTTGCTGACGCTTGGTTATCTGC
AATGCAAGACGTGTTAAAAGTAGAAAGCCAGAACAAAATCCCAGAACTGAATGAGTACCAATGTGGTACAGCGGCTATGC
ACTCGTTAGATGAAGCGAAACAGATTGCTGAAGCTATTCTTGCAGCTGGAGTTTCGGTTAACAAAAATGATGAGCTAGCG
CTGCCGGAAGAGATGCTAAAAGAGCTTAAAATAGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A178JBA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872