Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   HOO69_RS09580 Genome accession   NZ_CP053541
Coordinates   2112627..2114021 (-) Length   464 a.a.
NCBI ID   WP_171801944.1    Uniprot ID   A0AAE7AUU6
Organism   Vibrio europaeus strain NPI-1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2107627..2119021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HOO69_RS09545 (HOO69_09585) moaE 2108344..2108805 (-) 462 WP_171801940.1 molybdopterin synthase catalytic subunit MoaE -
  HOO69_RS09550 (HOO69_09590) moaD 2108808..2109053 (-) 246 WP_171801941.1 molybdopterin synthase sulfur carrier subunit -
  HOO69_RS09555 (HOO69_09595) moaC 2109050..2109529 (-) 480 WP_171801942.1 cyclic pyranopterin monophosphate synthase MoaC -
  HOO69_RS09560 (HOO69_09600) moaB 2109545..2110057 (-) 513 WP_004748419.1 molybdenum cofactor biosynthesis protein B -
  HOO69_RS09565 (HOO69_09605) moaA 2110134..2111121 (-) 988 Protein_1879 GTP 3',8-cyclase MoaA -
  HOO69_RS09570 (HOO69_09610) - 2111413..2112300 (+) 888 WP_171801943.1 YvcK family protein -
  HOO69_RS09575 (HOO69_09615) luxU 2112286..2112627 (-) 342 WP_004748414.1 quorum-sensing phosphorelay protein LuxU -
  HOO69_RS09580 (HOO69_09620) luxO 2112627..2114021 (-) 1395 WP_171801944.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  HOO69_RS09585 (HOO69_09625) uvrB 2114283..2116313 (-) 2031 WP_171801945.1 excinuclease ABC subunit UvrB -
  HOO69_RS09595 (HOO69_09635) - 2117189..2117917 (-) 729 WP_171801946.1 UTRA domain-containing protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51578.89 Da        Isoelectric Point: 5.7859

>NTDB_id=445055 HOO69_RS09580 WP_171801944.1 2112627..2114021(-) (luxO) [Vibrio europaeus strain NPI-1]
MQYNTQAKNSKYLLMVEDTASVAALYRSYLTPLQIDINIVGTGRDAIDSLNFRTPDLILLDLRLPDMTGMDVLHAVKEKN
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNALRKANKLKNEGDNSGSQGYQGFIGSSQTMQAVYRT
IDSAATSKASIFITGESGTGKEVCAEAIHATSKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNKDPWKEVEEGRFREDLYYRLYVIPLHLPPLRE
RGDDIIEIAYSLLGFMSKEEGKDFVRLAAEVVDRFARYEWPGNVRQLQNVLRNVVVLNNGREIDLAMLPPPLNQPSKNEI
RVTRPQNETVSVQDIFPLWLTEKNAIEQAIKACDGNIPKAAGYLDVSPSTIYRKLQAWNAKEVQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=445055 HOO69_RS09580 WP_171801944.1 2112627..2114021(-) (luxO) [Vibrio europaeus strain NPI-1]
ATGCAATATAATACACAAGCAAAAAACTCAAAGTATTTGTTGATGGTTGAAGATACCGCCTCTGTAGCGGCGCTGTATCG
TTCTTATCTCACGCCACTGCAAATTGATATCAACATTGTCGGCACTGGCCGTGATGCCATTGATAGCCTCAATTTTCGAA
CTCCAGACCTTATCCTGCTCGATCTGCGACTACCTGATATGACAGGTATGGACGTCTTGCACGCGGTGAAAGAAAAGAAC
CCGGATGTGCCCGTTATTTTTATGACCGCCCATGGTTCGATTGATACCGCCGTAGAAGCAATGCGTCATGGCGCGCAAGA
CTTCCTAATTAAACCCTGTGAAGCTGATCGACTCCGTGTAACAGTTAACAACGCTCTGCGTAAAGCGAACAAGCTGAAAA
ACGAAGGTGATAATTCGGGAAGTCAGGGATATCAAGGTTTCATCGGCAGTAGTCAAACGATGCAGGCGGTTTACAGAACC
ATTGACTCGGCGGCGACGAGTAAAGCCAGTATCTTTATTACTGGAGAAAGTGGTACTGGTAAAGAAGTGTGTGCAGAAGC
AATTCACGCAACCAGTAAACGTGGTGACAAACCGTTTATTGCCATCAACTGTGCTGCCATCCCAAAAGATCTGATTGAAA
GTGAGCTATTTGGTCACGTTAAAGGCGCATTTACCGGTGCTGCTACGGATCGCCAAGGTGCGGCGGAGCTTGCTGATGGC
GGCACGCTTTTCCTTGATGAGCTGTGTGAAATGGACTTAGATTTGCAAACTAAGCTATTACGTTTTATTCAAACTGGTAC
TTTCCAGAAAGTTGGTTCGTCGAAGATGAAGAGCGTGGATGTACGTTTTGTTTGTGCAACCAATAAAGATCCTTGGAAAG
AAGTCGAAGAAGGGCGCTTTCGCGAAGATTTGTACTATCGTTTGTATGTTATTCCTCTTCATTTGCCACCTTTGCGTGAA
CGCGGTGACGATATCATTGAAATTGCCTATTCACTGTTGGGTTTCATGTCTAAGGAAGAGGGTAAAGATTTTGTGCGTTT
GGCGGCTGAGGTTGTCGACCGTTTCGCGCGCTACGAATGGCCGGGCAATGTACGCCAGCTGCAAAATGTTTTACGTAATG
TGGTGGTATTAAATAATGGCCGTGAGATTGATTTAGCCATGCTGCCACCGCCGCTCAATCAACCATCAAAAAATGAGATT
CGCGTTACTAGGCCGCAAAATGAAACAGTCTCAGTACAAGATATATTCCCTTTGTGGCTTACTGAGAAAAATGCCATTGA
ACAGGCAATAAAAGCGTGTGATGGTAACATACCGAAAGCCGCGGGCTATTTGGATGTAAGTCCATCAACCATTTACAGAA
AACTACAAGCGTGGAATGCCAAGGAAGTACAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.892

96.121

0.845