Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ITP52_RS10885 Genome accession   NZ_CP064818
Coordinates   2170836..2171630 (+) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain SH1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2165836..2176630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS10865 (ITP52_10865) walR 2166078..2166785 (+) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -
  ITP52_RS10870 (ITP52_10870) walK 2166793..2168628 (+) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  ITP52_RS10875 (ITP52_10875) walH 2168618..2169985 (+) 1368 WP_041850604.1 WalRK two-component regulatory system regulator WalH -
  ITP52_RS10880 (ITP52_10880) walI 2169972..2170814 (+) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  ITP52_RS10885 (ITP52_10885) vicX 2170836..2171630 (+) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  ITP52_RS10890 (ITP52_10890) htrA 2171712..2172914 (+) 1203 WP_041850281.1 serine protease HtrC Regulator
  ITP52_RS10895 (ITP52_10895) - 2172934..2173063 (+) 130 Protein_2101 hypothetical protein -
  ITP52_RS10900 (ITP52_10900) - 2173085..2173243 (+) 159 Protein_2102 ATP-binding protein -
  ITP52_RS10905 (ITP52_10905) rocR 2173225..2174610 (-) 1386 WP_041850282.1 arginine utilization regulatory protein RocR -
  ITP52_RS10910 (ITP52_10910) rocD 2174851..2176056 (+) 1206 WP_041850283.1 ornithine aminotransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=445010 ITP52_RS10885 WP_003226939.1 2170836..2171630(+) (vicX) [Bacillus subtilis strain SH1]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=445010 ITP52_RS10885 WP_003226939.1 2170836..2171630(+) (vicX) [Bacillus subtilis strain SH1]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTGCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCAATGGAGAC
GGTGAAGTCGTTTGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTGTTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTATTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGGAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53