Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HMY34_RS10710 Genome accession   NZ_CP053482
Coordinates   2178594..2179073 (+) Length   159 a.a.
NCBI ID   WP_202715486.1    Uniprot ID   -
Organism   Thiothrix subterranea strain Ku-5     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2173594..2184073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMY34_RS10680 (HMY34_10665) - 2174012..2174395 (+) 384 WP_202715480.1 RidA family protein -
  HMY34_RS10685 (HMY34_10670) ppx 2174399..2175898 (+) 1500 WP_202715481.1 exopolyphosphatase -
  HMY34_RS10690 (HMY34_10675) - 2175998..2176330 (+) 333 WP_202715482.1 rhodanese-like domain-containing protein -
  HMY34_RS10695 (HMY34_10680) dsrE2 2176420..2176884 (+) 465 WP_202715483.1 sulfur carrier protein DsrE2 -
  HMY34_RS10700 (HMY34_10685) - 2176956..2177570 (+) 615 WP_202715484.1 NAD(P)H-dependent oxidoreductase -
  HMY34_RS10705 (HMY34_10690) - 2177586..2178449 (+) 864 WP_202715485.1 metallophosphoesterase -
  HMY34_RS10710 (HMY34_10695) pilG 2178594..2179073 (+) 480 WP_202715486.1 PleD family two-component system response regulator Regulator
  HMY34_RS10715 (HMY34_10700) - 2179084..2179470 (+) 387 WP_202715487.1 response regulator -
  HMY34_RS10720 (HMY34_10705) - 2179463..2179990 (+) 528 WP_202715488.1 chemotaxis protein CheW -
  HMY34_RS10725 (HMY34_10710) - 2179990..2181129 (+) 1140 WP_202715489.1 methyl-accepting chemotaxis protein -
  HMY34_RS10730 (HMY34_10715) - 2181143..2182963 (+) 1821 WP_202715490.1 hypothetical protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17590.23 Da        Isoelectric Point: 4.5619

>NTDB_id=444997 HMY34_RS10710 WP_202715486.1 2178594..2179073(+) (pilG) [Thiothrix subterranea strain Ku-5]
MPDTLNNTPERDLTGLKVVVVDDSKTILRTAEVLLTEQGCWVVTAGDGFESLSKIASFKPDVIFVDIMMPRLDGYQTCSL
IKANRQYRDTPVILLSSKDSIFDMARGRLAGSDKYLTKPFTKDDLLAAIYTHVKLPEASKPAVTPAETPEPPFIDLIDE

Nucleotide


Download         Length: 480 bp        

>NTDB_id=444997 HMY34_RS10710 WP_202715486.1 2178594..2179073(+) (pilG) [Thiothrix subterranea strain Ku-5]
ATGCCTGATACCCTAAATAATACGCCTGAACGCGACCTGACCGGCCTGAAAGTTGTCGTCGTGGATGACAGCAAAACCAT
TCTGCGCACTGCTGAGGTGTTACTCACTGAGCAGGGGTGTTGGGTGGTGACTGCCGGTGATGGCTTTGAGTCCTTGTCAA
AAATAGCGTCTTTTAAACCGGATGTTATTTTCGTGGATATTATGATGCCACGCTTAGATGGCTATCAAACCTGTTCACTC
ATCAAGGCAAATCGCCAGTACCGTGATACCCCGGTTATTCTCTTGTCGAGCAAAGACAGCATTTTTGATATGGCGCGAGG
GCGATTGGCGGGTTCTGATAAGTACCTAACCAAACCGTTCACCAAAGATGATTTGCTGGCAGCTATTTACACGCACGTCA
AGTTACCGGAAGCATCCAAACCAGCGGTAACGCCAGCAGAAACGCCAGAACCTCCCTTCATTGATCTGATTGACGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(18-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

66.129

77.987

0.516