Detailed information NTG0444996

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ITP52_RS08925
• Genome accession: NZ_CP064818
• Coordinates: 1817985..1819106 (-)
• Length: 373 a.a.
• NCBI ID: WP_015715201.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain SH1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1812985..1824106

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ITP52_RS08905 (ITP52_08905)	znuC	1813495..1814190 (-)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-
ITP52_RS08910 (ITP52_08910)	znuA	1814245..1815204 (-)	960	WP_015715203.1	metal ABC transporter substrate-binding protein	-
ITP52_RS08915 (ITP52_08915)	ycdG	1815392..1817077 (-)	1686	WP_015715202.1	alpha-glucosidase	-
ITP52_RS08920 (ITP52_08920)	ycdF	1817102..1817878 (-)	777	WP_003234739.1	SDR family oxidoreductase	-
ITP52_RS08925 (ITP52_08925)	rapF	1817985..1819106 (-)	1122	WP_015715201.1	response regulator aspartate phosphatase RapJ	Regulator
ITP52_RS08930 (ITP52_08930)	cwlK	1819229..1819732 (+)	504	WP_015715200.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
ITP52_RS08935 (ITP52_08935)	ycdC	1819740..1821101 (-)	1362	WP_041520542.1	YcdB/YcdC domain-containing protein	-
ITP52_RS08940 (ITP52_08940)	ycdB	1821288..1822706 (-)	1419	WP_015715198.1	YcdB/YcdC domain-containing protein	-
ITP52_RS08945 (ITP52_08945)	-	1822880..1823011 (+)	132	WP_003246334.1	hypothetical protein	-
ITP52_RS08950 (ITP52_08950)	ycdA	1823034..1824098 (+)	1065	WP_003234750.1	DUF4352 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44400.29 Da
• Isoelectric Point: 4.8344

>NTDB_id=444996 ITP52_RS08925 WP_015715201.1 1817985..1819106(-) (rapF) [Bacillus subtilis strain SH1]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=444996 ITP52_RS08925 WP_015715201.1 1817985..1819106(-) (rapF) [Bacillus subtilis strain SH1]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTACTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATTGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCATACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAGGCAGTAGAGGCTTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGACAGCTTCTTGCTGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405