Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HMY34_RS05050 Genome accession   NZ_CP053482
Coordinates   1056354..1057718 (+) Length   454 a.a.
NCBI ID   WP_202718208.1    Uniprot ID   -
Organism   Thiothrix subterranea strain Ku-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1051354..1062718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMY34_RS05025 (HMY34_05020) - 1051603..1051959 (-) 357 WP_202718203.1 hypothetical protein -
  HMY34_RS05030 (HMY34_05025) - 1052308..1052646 (-) 339 WP_202718204.1 hypothetical protein -
  HMY34_RS05035 (HMY34_05030) ffh 1052776..1054158 (-) 1383 WP_202718205.1 signal recognition particle protein -
  HMY34_RS05040 (HMY34_05035) - 1054266..1055069 (+) 804 WP_202718206.1 inner membrane protein YpjD -
  HMY34_RS05045 (HMY34_05040) - 1055072..1056361 (+) 1290 WP_202718207.1 HlyC/CorC family transporter -
  HMY34_RS05050 (HMY34_05045) radA 1056354..1057718 (+) 1365 WP_202718208.1 DNA repair protein RadA Machinery gene
  HMY34_RS05055 (HMY34_05050) - 1057918..1059534 (+) 1617 WP_202718209.1 DEAD/DEAH box helicase -
  HMY34_RS05060 (HMY34_05055) - 1059547..1059750 (+) 204 WP_202718210.1 YdcH family protein -
  HMY34_RS05065 (HMY34_05060) - 1059739..1060698 (-) 960 WP_202718211.1 Nudix family hydrolase -
  HMY34_RS05070 (HMY34_05065) argJ 1060679..1061887 (-) 1209 WP_202718212.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48862.62 Da        Isoelectric Point: 8.3660

>NTDB_id=444991 HMY34_RS05050 WP_202718208.1 1056354..1057718(+) (radA) [Thiothrix subterranea strain Ku-5]
MSKVKLQYHCTACGSLHPKWSGQCGECGAWNTMEESISLPASKQAANQRAGGYAGETAVIRSLNEVSLSEAPRILTHQPE
LDRVLGGGLVSGSVVLIGGDPGIGKSTILLQTLATLTEMKTLYVTGEESLQQVGLRAKRLGLPSDHLRLLTETCVETILS
LVVQEKPQLMVIDSIQTVFTDSLQAAPGSVSQIRESAAKLVRFAKQTNTAMFLVGHVTKEGTLAGPRVLEHMVDTVLYFE
GDPGGRYRIIRAVKNRFGAVNELGVFAMTEQGLKGVSNPSAIFLSRHEEPVSGSVIMVTREGTRPLMVEVQALVDQSHGA
VPRRVTLGLEQNRLAMLLAVLHRHAGISMFDQDVFINVVGGVKISETAADLSLLLAALSSFRNRPLPADLVVFGEVGLAG
EIRPVPNGEERLREAAKHGFKQAIVAKGNKPRHPIEGMKVVAIARLEKAIEIVM

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=444991 HMY34_RS05050 WP_202718208.1 1056354..1057718(+) (radA) [Thiothrix subterranea strain Ku-5]
ATGAGTAAGGTCAAGCTTCAATACCACTGCACCGCCTGCGGCAGTCTGCACCCCAAATGGAGCGGGCAATGCGGTGAATG
CGGTGCATGGAATACGATGGAGGAAAGCATAAGCCTACCCGCAAGCAAGCAAGCAGCCAATCAACGGGCGGGGGGCTACG
CGGGTGAAACCGCCGTGATTCGCTCCCTCAACGAAGTGAGCTTAAGTGAAGCACCGCGCATCCTCACCCACCAACCCGAA
CTGGATCGGGTACTCGGCGGCGGACTAGTGTCAGGCTCGGTGGTACTCATCGGTGGCGACCCCGGCATTGGCAAATCCAC
CATTTTGCTGCAAACGCTTGCCACTTTAACCGAAATGAAAACCCTGTACGTGACCGGCGAAGAATCGCTGCAACAAGTGG
GCTTACGTGCCAAACGTTTAGGGCTACCCAGCGACCACTTGCGCCTGCTCACCGAAACCTGTGTGGAAACCATCCTCAGT
TTGGTGGTGCAAGAAAAACCGCAGTTGATGGTGATTGACTCTATCCAAACCGTGTTTACCGACAGCTTGCAAGCGGCGCC
CGGTTCGGTTAGCCAAATCCGCGAATCAGCGGCTAAACTGGTGCGTTTCGCTAAGCAAACCAATACCGCCATGTTTCTGG
TCGGTCATGTCACCAAAGAAGGCACACTGGCAGGGCCGCGTGTCCTTGAACACATGGTCGATACCGTGCTGTATTTTGAA
GGCGACCCTGGCGGACGTTACCGCATTATTCGCGCCGTCAAAAACCGTTTCGGCGCGGTCAACGAACTTGGCGTATTCGC
CATGACCGAACAAGGCTTGAAAGGTGTCAGCAACCCGTCCGCTATTTTCCTGTCACGCCACGAAGAACCCGTTTCCGGCA
GTGTCATCATGGTCACACGCGAAGGCACACGCCCACTCATGGTGGAAGTGCAAGCGCTGGTCGACCAAAGTCACGGTGCA
GTACCGCGTCGCGTGACCTTGGGACTGGAACAAAATCGCCTCGCGATGTTGCTGGCCGTGCTGCATAGGCACGCCGGAAT
CTCAATGTTTGACCAAGACGTATTCATTAATGTTGTCGGTGGTGTTAAGATTTCGGAAACCGCTGCTGATTTATCATTGT
TGTTAGCGGCACTTTCAAGTTTTCGCAACCGTCCTCTGCCTGCTGATCTGGTGGTTTTTGGAGAAGTTGGGCTGGCTGGC
GAAATTCGCCCAGTTCCAAACGGTGAGGAGCGTTTGCGTGAGGCTGCCAAACACGGTTTTAAACAGGCTATCGTAGCGAA
AGGAAACAAGCCACGTCACCCGATTGAGGGGATGAAAGTGGTCGCCATTGCCAGATTGGAGAAAGCGATAGAAATTGTGA
TGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.289

100

0.48
  radA Streptococcus mitis NCTC 12261

45.714

100

0.458
  radA Streptococcus mitis SK321

45.714

100

0.458
  radA Streptococcus pneumoniae Rx1

46.977

94.714

0.445
  radA Streptococcus pneumoniae D39

46.977

94.714

0.445
  radA Streptococcus pneumoniae R6

46.977

94.714

0.445
  radA Streptococcus pneumoniae TIGR4

46.977

94.714

0.445