Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ITP52_RS08185 Genome accession   NZ_CP064818
Coordinates   1647015..1647449 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1642015..1652449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS08170 (ITP52_08170) epsK 1642644..1643495 (-) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -
  ITP52_RS08175 (ITP52_08175) ephJ 1643476..1644564 (-) 1089 WP_003246551.1 lipoprotein -
  ITP52_RS08180 (ITP52_08180) topB 1644767..1646950 (-) 2184 WP_003246684.1 DNA topoisomerase III -
  ITP52_RS08185 (ITP52_08185) lrpC 1647015..1647449 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ITP52_RS08190 (ITP52_08190) ydzA 1647634..1647924 (+) 291 WP_003246602.1 DUF3817 domain-containing protein -
  ITP52_RS08195 (ITP52_08195) amj 1647968..1648777 (-) 810 WP_003234394.1 lipid II flippase Amj -
  ITP52_RS08200 (ITP52_08200) ydaG 1649283..1649705 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  ITP52_RS08205 (ITP52_08205) ydaF 1649783..1650334 (-) 552 WP_041850710.1 GNAT family protein -
  ITP52_RS08210 (ITP52_08210) lyxE 1650422..1650925 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  ITP52_RS08215 (ITP52_08215) ydaD 1650941..1651801 (-) 861 WP_003234401.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=444985 ITP52_RS08185 WP_003246585.1 1647015..1647449(-) (lrpC) [Bacillus subtilis strain SH1]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=444985 ITP52_RS08185 WP_003246585.1 1647015..1647449(-) (lrpC) [Bacillus subtilis strain SH1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1