Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ITP52_RS06920 Genome accession   NZ_CP064818
Coordinates   1398080..1399210 (-) Length   376 a.a.
NCBI ID   WP_085187021.1    Uniprot ID   -
Organism   Bacillus subtilis strain SH1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1393080..1404210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS06875 (ITP52_06875) cotJC 1393211..1393780 (-) 570 WP_003233850.1 spore coat protein CotJC -
  ITP52_RS06880 (ITP52_06880) cotJB 1393795..1394058 (-) 264 WP_003219491.1 spore coat protein CotJB -
  ITP52_RS06885 (ITP52_06885) cotJA 1394042..1394290 (-) 249 WP_003219489.1 spore coat-associated protein CotJA -
  ITP52_RS06890 (ITP52_06890) yesF 1394417..1395285 (-) 869 Protein_1360 NAD-dependent epimerase/dehydratase family protein -
  ITP52_RS06895 (ITP52_06895) yesE 1395282..1395725 (-) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  ITP52_RS06900 (ITP52_06900) yezE 1395804..1396388 (-) 585 WP_003233859.1 TetR/AcrR family transcriptional regulator -
  ITP52_RS06905 (ITP52_06905) - 1396503..1396904 (-) 402 WP_032677447.1 hypothetical protein -
  ITP52_RS06910 (ITP52_06910) yeeI 1397038..1397757 (-) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ITP52_RS06915 (ITP52_06915) phrH 1397917..1398090 (-) 174 WP_029317430.1 phosphatase RapH inhibitor PhrH -
  ITP52_RS06920 (ITP52_06920) rapC 1398080..1399210 (-) 1131 WP_085187021.1 response regulator aspartate phosphatase RapH Regulator
  ITP52_RS06925 (ITP52_06925) - 1399372..1400226 (-) 855 WP_120363293.1 hypothetical protein -
  ITP52_RS06930 (ITP52_06930) - 1400354..1401362 (-) 1009 Protein_1368 hypothetical protein -
  ITP52_RS06935 (ITP52_06935) - 1401573..1403459 (+) 1887 WP_120363291.1 T7SS effector LXG polymorphic toxin -
  ITP52_RS06940 (ITP52_06940) - 1403472..1403867 (+) 396 WP_048655144.1 immunity 22 family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43991.27 Da        Isoelectric Point: 5.7170

>NTDB_id=444982 ITP52_RS06920 WP_085187021.1 1398080..1399210(-) (rapC) [Bacillus subtilis strain SH1]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=444982 ITP52_RS06920 WP_085187021.1 1398080..1399210(-) (rapC) [Bacillus subtilis strain SH1]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAGATGGAAGAAGACCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGACGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402