Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ITP52_RS06425 Genome accession   NZ_CP064818
Coordinates   1296075..1296791 (-) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis strain SH1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1291075..1301791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS06420 (ITP52_06420) hypO 1295270..1295935 (-) 666 WP_003243096.1 NAD(P)H-dependent oxidoreductase -
  ITP52_RS06425 (ITP52_06425) treR 1296075..1296791 (-) 717 WP_003233679.1 trehalose operon repressor Regulator
  ITP52_RS06430 (ITP52_06430) treC 1296812..1298497 (-) 1686 WP_003244272.1 alpha,alpha-phosphotrehalase -
  ITP52_RS06435 (ITP52_06435) treP 1298568..1299980 (-) 1413 WP_003233682.1 PTS system trehalose-specific EIIBC component -
  ITP52_RS06440 (ITP52_06440) yfkQ 1300169..1301710 (+) 1542 WP_069703764.1 spore germination protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=444981 ITP52_RS06425 WP_003233679.1 1296075..1296791(-) (treR) [Bacillus subtilis strain SH1]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=444981 ITP52_RS06425 WP_003233679.1 1296075..1296791(-) (treR) [Bacillus subtilis strain SH1]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTAGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416