Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HOP49_RS06980 Genome accession   NZ_CP053478
Coordinates   1384341..1386032 (+) Length   563 a.a.
NCBI ID   WP_003738883.1    Uniprot ID   A0A0B8RFK2
Organism   Listeria monocytogenes strain OB020621     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1379341..1391032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HOP49_RS06950 (HOP49_06955) - 1379351..1379578 (+) 228 WP_003722489.1 exodeoxyribonuclease VII small subunit -
  HOP49_RS06955 (HOP49_06960) - 1379581..1380462 (+) 882 WP_003726251.1 polyprenyl synthetase family protein -
  HOP49_RS06960 (HOP49_06965) - 1380661..1380861 (+) 201 WP_003719639.1 cold-shock protein -
  HOP49_RS06965 (HOP49_06970) dxs 1381028..1382857 (+) 1830 WP_010958892.1 1-deoxy-D-xylulose-5-phosphate synthase -
  HOP49_RS06970 (HOP49_06975) - 1382854..1383678 (+) 825 WP_003726253.1 TlyA family RNA methyltransferase -
  HOP49_RS06975 (HOP49_06980) argR 1383869..1384318 (+) 450 WP_003722493.1 transcriptional regulator ArgR -
  HOP49_RS06980 (HOP49_06985) recN 1384341..1386032 (+) 1692 WP_003738883.1 DNA repair protein RecN Machinery gene
  HOP49_RS06985 (HOP49_06990) - 1386162..1387028 (+) 867 WP_003726255.1 phosphate acyltransferase -
  HOP49_RS06990 (HOP49_06995) buk 1387165..1388232 (+) 1068 WP_003726256.1 butyrate kinase -
  HOP49_RS06995 (HOP49_07000) lpdA 1388247..1389674 (+) 1428 WP_003726257.1 dihydrolipoyl dehydrogenase -
  HOP49_RS07000 (HOP49_07005) - 1389699..1390694 (+) 996 WP_003726258.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63518.26 Da        Isoelectric Point: 5.1296

>NTDB_id=444964 HOP49_RS06980 WP_003738883.1 1384341..1386032(+) (recN) [Listeria monocytogenes strain OB020621]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKAELTKQANTLTEIRKKAAVTLEKQIKQELNHLYMEKAIFSVRFE
ANKMELTDSGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGEEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=444964 HOP49_RS06980 WP_003738883.1 1384341..1386032(+) (recN) [Listeria monocytogenes strain OB020621]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCATGGAGAAGAACGTTTAGAACTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCG
TTAATTGAAAATGGGATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGCCTGTTTCGCTCGGGGAAAAATAGTTG
CCGAATTAATGGCAAACTTGTAACTACCGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTGTCATTACTTGATCGTTTCGCTTCTGACAAAATCAAGCCAGCACTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACAATCGAGAAAGAGTGGCAAAATTGGACGAAAAATGAGCGGGAATT
AGCGCAACGTCTGGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCCAATTTGCAAGCTGGTGAAGAAGATCGCT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGAGCTTATGCCGCGATTCAAGGT
GAGCCTGGTGGGCTGGAATTTGTTGGAGAAGCAATGCGTCAAATGGAGGCAGCGGCGAGTATTCATACGGATTATAAAGC
GGTTAGTGAGGCCATTTCTTCTAGTTACTATATGTTAGAAGATAGCATGAGCCAAATTAGGCAATCACTAGATCAGCTCG
AATTCCAACCAGAAGAACTGAATCAAATTGAATCACGTTTGAATGATTTAAACCAATTAAAACGCAAATATGGTAAAACA
ATTGAAGATATCATTCAATACGAACAAGAAATAAGCAGCGAAATGGAAAAACTGACAGATAGTGAATCACATGTCGGGCA
TTTAGAGACCAAATTAGCAACACTTAAAGCAGAACTAACAAAACAAGCAAATACACTAACGGAAATCCGTAAAAAAGCGG
CTGTTACATTAGAAAAACAAATCAAACAAGAATTAAATCACTTATATATGGAGAAAGCCATTTTTAGTGTACGCTTCGAA
GCAAACAAAATGGAACTAACAGATTCAGGGCAAGATAGCGTCGTTTTCTATATGTCAACAAACCCGGGTGAACCTTTAAA
ACCATTAGCAAAAATCGCTTCTGGTGGAGAGTTATCTAGAATGATGTTAGCATTAAAAACCATTTTTTCTAGGCACCAAG
GTATCACCTCGATTATTTTCGATGAAGTAGATACTGGTGTAAGTGGTCGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTTGGCTCGCAAGTACTATGCATTAGTCACTTACCTCAAGTTGCAGCAATGGCGAACCATCACTACTACAT
TACGAAAAAAGTCCAAAACAAACGGACAACAACTTCCGTTACAGTGCTTAAAGGGGAAGAGAAAGTAGAAGAAATCAGTC
GAATGATTGCTGGAATAGAAGTCACCGAATTAACCAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B8RFK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.257

100

0.535