Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ITP52_RS03940 Genome accession   NZ_CP064818
Coordinates   832842..833978 (-) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain SH1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 827842..838978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS03900 (ITP52_03900) xre 828175..828516 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  ITP52_RS03905 (ITP52_03905) xkdA 828679..829275 (+) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  ITP52_RS03910 (ITP52_03910) xpdC 829319..830155 (-) 837 WP_003245071.1 manganese catalase family protein -
  ITP52_RS03915 (ITP52_03915) pghB 830232..830834 (-) 603 WP_038828723.1 poly-gamma-glutamate hydrolase family protein -
  ITP52_RS03920 (ITP52_03920) yjqA 830939..831316 (+) 378 WP_041850940.1 PH domain-containing protein -
  ITP52_RS03925 (ITP52_03925) xlyB 831356..832309 (-) 954 WP_041850941.1 N-acetylmuramoyl-L-alanine amidase -
  ITP52_RS03930 (ITP52_03930) yjpA 832430..832687 (+) 258 WP_003232731.1 YciI family protein -
  ITP52_RS03935 (ITP52_03935) phrA 832718..832852 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  ITP52_RS03940 (ITP52_03940) rapC 832842..833978 (-) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  ITP52_RS03945 (ITP52_03945) yjoB 834123..835394 (-) 1272 WP_041850942.1 ATPase YjoB -
  ITP52_RS03950 (ITP52_03950) bstD 835543..836007 (+) 465 WP_041850943.1 DinB family protein -
  ITP52_RS03955 (ITP52_03955) yjnA 836232..836996 (+) 765 WP_038828729.1 sulfite exporter TauE/SafE family protein -
  ITP52_RS03960 (ITP52_03960) uxaA 837035..838528 (-) 1494 WP_041850944.1 altronate dehydratase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=444956 ITP52_RS03940 WP_015252291.1 832842..833978(-) (rapC) [Bacillus subtilis strain SH1]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=444956 ITP52_RS03940 WP_015252291.1 832842..833978(-) (rapC) [Bacillus subtilis strain SH1]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418