Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ITP52_RS01545 Genome accession   NZ_CP064818
Coordinates   370377..370808 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SH1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 365377..375808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS01535 (ITP52_01535) mutS 366862..369437 (-) 2576 Protein_307 DNA mismatch repair protein MutS -
  ITP52_RS01540 (ITP52_01540) cotE 369570..370115 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  ITP52_RS01545 (ITP52_01545) ymcA 370377..370808 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  ITP52_RS01550 (ITP52_01550) miaB 370810..372339 (-) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ITP52_RS01555 (ITP52_01555) kbl 372487..373665 (-) 1179 WP_015715903.1 glycine C-acetyltransferase -
  ITP52_RS01560 (ITP52_01560) tdh 373678..374721 (-) 1044 WP_015715902.1 L-threonine 3-dehydrogenase -
  ITP52_RS01565 (ITP52_01565) spoVS 374986..375246 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=444935 ITP52_RS01545 WP_003231834.1 370377..370808(-) (ymcA) [Bacillus subtilis strain SH1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=444935 ITP52_RS01545 WP_003231834.1 370377..370808(-) (ymcA) [Bacillus subtilis strain SH1]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGTTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1