Detailed information NTG0044487

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: O3K_RS05790
• Genome accession: NC_018658
• Coordinates: 1199119..1200111 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O104:H4 str. 2011C-3493
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1194119..1205111

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O3K_RS05760 (O3K_05795)	ispD	1194180..1194890 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
O3K_RS05765 (O3K_05800)	ispF	1194890..1195369 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
O3K_RS05770 (O3K_05805)	truD	1195366..1196415 (+)	1050	WP_000568956.1	tRNA pseudouridine(13) synthase TruD	-
O3K_RS05775 (O3K_05810)	surE	1196396..1197157 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
O3K_RS05780 (O3K_05815)	pcm	1197151..1197777 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
O3K_RS05785 (O3K_05820)	nlpD	1197962..1199056 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
O3K_RS05790 (O3K_05825)	rpoS	1199119..1200111 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
O3K_RS05795 (O3K_05830)	-	1200232..1200639 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
O3K_RS05800 (O3K_05835)	-	1200786..1201379 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
O3K_RS05805 (O3K_05840)	-	1201379..1202806 (+)	1428	WP_000863197.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
O3K_RS05810 (O3K_05845)	-	1202817..1203053 (+)	237	WP_000562990.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
O3K_RS05815 (O3K_05850)	ygbN	1203093..1204457 (-)	1365	WP_000104428.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=44487 O3K_RS05790 WP_000081550.1 1199119..1200111(+) (rpoS) [Escherichia coli O104:H4 str. 2011C-3493]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=44487 O3K_RS05790 WP_000081550.1 1199119..1200111(+) (rpoS) [Escherichia coli O104:H4 str. 2011C-3493]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715