Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CBX32_RS00290 Genome accession   NZ_CP053417
Coordinates   57355..57969 (-) Length   204 a.a.
NCBI ID   WP_020843815.1    Uniprot ID   S5MU36
Organism   Salmonella bongori strain 92-0238     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 52355..62969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBX32_RS00275 helD 52582..54636 (-) 2055 WP_171922125.1 DNA helicase IV -
  CBX32_RS00280 - 54759..55205 (+) 447 WP_001261225.1 YccF domain-containing protein -
  CBX32_RS00285 yccS 55224..57377 (+) 2154 WP_000950885.1 YccS family putative transporter -
  CBX32_RS00290 sxy/tfoX 57355..57969 (-) 615 WP_020843815.1 TfoX/Sxy family DNA transformation protein Regulator
  CBX32_RS00295 sulA 58186..58695 (+) 510 WP_038390870.1 SOS-induced cell division inhibitor SulA -
  CBX32_RS00300 ompA 59052..60101 (+) 1050 WP_171922126.1 porin OmpA -
  CBX32_RS00305 matP 60172..60624 (-) 453 WP_000877171.1 macrodomain Ter protein MatP -
  CBX32_RS00310 - 60810..62570 (+) 1761 WP_079773344.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23622.38 Da        Isoelectric Point: 9.2752

>NTDB_id=444827 CBX32_RS00290 WP_020843815.1 57355..57969(-) (sxy/tfoX) [Salmonella bongori strain 92-0238]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEQSVSYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKFSLEAAMKEKHSRFSQHRLKDLPNMTFHLETLLNESGIKDESMLRVLGAKMCWLRLRQNN
PLLTVKILYALEGAIVGVHEAALPTNRRQELADWVHSLTAAQAR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=444827 CBX32_RS00290 WP_020843815.1 57355..57969(-) (sxy/tfoX) [Salmonella bongori strain 92-0238]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCATCTTTGGGGACGATTCAGTATCGATCTTT
ATTCGGCAGCTATAGCCTGACCGTGGAAGATACCGTTTTTGCGATGGTGGCGAATGGCGAGCTCTATCTCCGCGCCTGTG
AACAAAGCGTATCCTATTGTGTGAAGCATCCTCCTGTCTGGCTCACATTTATGAAATGTGGACGCCCCGTTATGCTCAAC
TATTACCGGGTCGATGAAAGCCTCTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTTTTCTCTTGAAGCAGCAAT
GAAAGAAAAACATAGCCGTTTTTCACAGCACAGGCTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAGAGCATGTTACGCGTACTGGGCGCTAAAATGTGCTGGCTGAGGCTGCGACAAAATAAT
CCGTTGCTAACGGTAAAGATCCTGTATGCGTTGGAAGGCGCCATTGTTGGCGTACATGAGGCGGCGCTCCCGACAAATCG
TCGCCAGGAGCTTGCCGACTGGGTGCATTCGCTTACGGCTGCGCAAGCCCGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S5MU36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.248

99.02

0.745