Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CBY01_RS16405 Genome accession   NZ_CP053416
Coordinates   3551555..3552169 (+) Length   204 a.a.
NCBI ID   WP_020843815.1    Uniprot ID   S5MU36
Organism   Salmonella bongori strain 85-0051     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3546555..3557169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBY01_RS16385 - 3546955..3548715 (-) 1761 WP_079773344.1 Lon protease family protein -
  CBY01_RS16390 matP 3548901..3549353 (+) 453 WP_000877171.1 macrodomain Ter protein MatP -
  CBY01_RS16395 ompA 3549423..3550472 (-) 1050 WP_079794466.1 porin OmpA -
  CBY01_RS16400 sulA 3550829..3551338 (-) 510 WP_038390870.1 SOS-induced cell division inhibitor SulA -
  CBY01_RS16405 sxy/tfoX 3551555..3552169 (+) 615 WP_020843815.1 TfoX/Sxy family DNA transformation protein Regulator
  CBY01_RS16410 yccS 3552147..3554300 (-) 2154 WP_079794465.1 YccS family putative transporter -
  CBY01_RS16415 - 3554319..3554765 (-) 447 WP_001261225.1 YccF domain-containing protein -
  CBY01_RS16420 helD 3554888..3556942 (+) 2055 WP_079794464.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23622.38 Da        Isoelectric Point: 9.2752

>NTDB_id=444826 CBY01_RS16405 WP_020843815.1 3551555..3552169(+) (sxy/tfoX) [Salmonella bongori strain 85-0051]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEQSVSYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKFSLEAAMKEKHSRFSQHRLKDLPNMTFHLETLLNESGIKDESMLRVLGAKMCWLRLRQNN
PLLTVKILYALEGAIVGVHEAALPTNRRQELADWVHSLTAAQAR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=444826 CBY01_RS16405 WP_020843815.1 3551555..3552169(+) (sxy/tfoX) [Salmonella bongori strain 85-0051]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCATCTTTGGGGACGATTCAGTATCGATCTTT
ATTCGGCAGCTATAGCCTGACCGTGGAAGATACCGTTTTTGCGATGGTGGCGAATGGCGAGCTCTATCTCCGCGCCTGTG
AACAAAGCGTATCCTATTGTGTGAAGCATCCTCCTGTCTGGCTCACGTTTATGAAATGTGGACGCCCCGTTATGCTCAAC
TATTACCGGGTCGATGAAAGCCTCTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTTTTCTCTTGAAGCGGCAAT
GAAAGAAAAACATAGCCGTTTTTCACAGCACAGGCTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAGAGCATGTTACGCGTACTAGGCGCTAAAATGTGCTGGCTGAGGCTGCGACAAAATAAT
CCGTTGCTAACGGTAAAGATCCTGTATGCGTTGGAAGGCGCCATTGTTGGCGTACATGAGGCGGCGCTCCCGACAAATCG
TCGCCAGGAGCTTGCCGACTGGGTGCATTCGCTTACGGCTGCGCAAGCCCGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S5MU36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.248

99.02

0.745