Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HK441_RS07545 Genome accession   NZ_CP053394
Coordinates   1582722..1584035 (-) Length   437 a.a.
NCBI ID   WP_001917480.1    Uniprot ID   A0AAE7DV33
Organism   Helicobacter pylori strain HP1352     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1577722..1589035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK441_RS07515 (HK441_07475) nadC 1578191..1579012 (-) 822 WP_001917475.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HK441_RS07520 (HK441_07480) nadA 1579012..1580016 (-) 1005 WP_001917476.1 quinolinate synthase NadA -
  HK441_RS07525 (HK441_07485) - 1580006..1580809 (-) 804 WP_001917477.1 phosphatidylserine decarboxylase -
  HK441_RS07530 (HK441_07490) - 1580803..1581309 (-) 507 WP_000953090.1 hypothetical protein -
  HK441_RS07535 (HK441_07495) - 1581322..1581816 (-) 495 WP_001917478.1 hypothetical protein -
  HK441_RS07540 (HK441_07500) mqnP 1581809..1582651 (-) 843 WP_253805042.1 menaquinone biosynthesis prenyltransferase MqnP -
  HK441_RS07545 (HK441_07505) comEC/comE3 1582722..1584035 (-) 1314 WP_001917480.1 ComEC/Rec2 family competence protein Machinery gene
  HK441_RS07550 (HK441_07510) - 1584032..1585492 (-) 1461 WP_001917481.1 replicative DNA helicase -
  HK441_RS07555 (HK441_07515) - 1585503..1586897 (-) 1395 WP_001917482.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HK441_RS07560 (HK441_07520) crdS 1586900..1588102 (-) 1203 WP_080032078.1 copper-sensing histidine kinase CrdS -
  HK441_RS07565 (HK441_07525) crdR 1588068..1588709 (-) 642 WP_001917485.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50424.36 Da        Isoelectric Point: 9.9068

>NTDB_id=444759 HK441_RS07545 WP_001917480.1 1582722..1584035(-) (comEC/comE3) [Helicobacter pylori strain HP1352]
MKDKTFQGAFELLATPKEYLWCGVFLSLLLAINLYLEYLNYQKLDFSKPTNLNAQILLQYPKTKDQKTYFVLKLQSKNMI
FYSTIKEPLKNLQYRHAQFFGKIKSCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSTHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQAISLS
ALVFLNMLIIAHAFFPMFSPYQIFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRLLSMPLTIPTIFIFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=444759 HK441_RS07545 WP_001917480.1 1582722..1584035(-) (comEC/comE3) [Helicobacter pylori strain HP1352]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAACCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCAAAAAACATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAATCTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGCAAACAGGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCACTCATTCCAACGCTTTAGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAATGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGTTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATTGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAAGCCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGATCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTGGGGTCTTTGTTGGATCGCC
TTTTAAGCATGCCTTTAACAATCCCTACGATTTTTATTTTTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

96.339

100

0.963