Detailed information NTG0444724

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HK442_RS01120
• Genome accession: NZ_CP053392
• Coordinates: 249004..250059 (+)
• Length: 351 a.a.
• NCBI ID: WP_171407256.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain HP9192
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 244004..255059

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HK442_RS01090 (HK442_01090)	-	244424..244837 (+)	414	WP_001023005.1	universal stress protein	-
HK442_RS01095 (HK442_01095)	-	244859..245134 (+)	276	WP_001916851.1	ATP-dependent Clp protease adaptor ClpS	-
HK442_RS01100 (HK442_01100)	-	245134..247353 (+)	2220	WP_001916850.1	ATP-dependent Clp protease ATP-binding subunit	-
HK442_RS01105 (HK442_01105)	panD	247343..247696 (+)	354	WP_001916849.1	aspartate 1-decarboxylase	-
HK442_RS01110 (HK442_01110)	-	247699..248001 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HK442_RS01115 (HK442_01115)	-	248001..248996 (+)	996	WP_001916848.1	PDZ domain-containing protein	-
HK442_RS01120 (HK442_01120)	comB6	249004..250059 (+)	1056	WP_171407256.1	P-type conjugative transfer protein TrbL	Machinery gene
HK442_RS01125 (HK442_01125)	comB7	250075..250188 (+)	114	WP_001217868.1	hypothetical protein	Machinery gene
HK442_RS01130 (HK442_01130)	comB8	250185..250922 (+)	738	WP_001916845.1	virB8 family protein	Machinery gene
HK442_RS01135 (HK442_01135)	comB9	250922..251899 (+)	978	WP_001916844.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HK442_RS01140 (HK442_01140)	comB10	251892..253028 (+)	1137	WP_001916843.1	DNA type IV secretion system protein ComB10	Machinery gene
HK442_RS01145 (HK442_01145)	-	253099..254511 (+)	1413	WP_001916842.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39916.78 Da
• Isoelectric Point: 8.8155

>NTDB_id=444724 HK442_RS01120 WP_171407256.1 249004..250059(+) (comB6) [Helicobacter pylori strain HP9192]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASTLTEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVIICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNISQNALNSLQYITTSPASSPISTSTSESTSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=444724 HK442_RS01120 WP_171407256.1 249004..250059(+) (comB6) [Helicobacter pylori strain HP9192]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAGGAACAGAATTTCTTCAGCGCTAGCACGCTAACAGAAGCGTTATGGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCACCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTTTTG
TTTGCGATTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGAAGCGTTGTAATTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCACTAACATCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCTCACCCGCTTCCTCTCCTATTTCTACTTCTACAAGCGAAAGCACCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.157	100	0.952