Detailed information NTG0444727

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HK442_RS01135
• Genome accession: NZ_CP053392
• Coordinates: 250922..251899 (+)
• Length: 325 a.a.
• NCBI ID: WP_001916844.1
• Uniprot ID: A0AAE7AS63
• Organism: Helicobacter pylori strain HP9192
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 245922..256899

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HK442_RS01105 (HK442_01105)	panD	247343..247696 (+)	354	WP_001916849.1	aspartate 1-decarboxylase	-
HK442_RS01110 (HK442_01110)	-	247699..248001 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HK442_RS01115 (HK442_01115)	-	248001..248996 (+)	996	WP_001916848.1	PDZ domain-containing protein	-
HK442_RS01120 (HK442_01120)	comB6	249004..250059 (+)	1056	WP_171407256.1	P-type conjugative transfer protein TrbL	Machinery gene
HK442_RS01125 (HK442_01125)	comB7	250075..250188 (+)	114	WP_001217868.1	hypothetical protein	Machinery gene
HK442_RS01130 (HK442_01130)	comB8	250185..250922 (+)	738	WP_001916845.1	virB8 family protein	Machinery gene
HK442_RS01135 (HK442_01135)	comB9	250922..251899 (+)	978	WP_001916844.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HK442_RS01140 (HK442_01140)	comB10	251892..253028 (+)	1137	WP_001916843.1	DNA type IV secretion system protein ComB10	Machinery gene
HK442_RS01145 (HK442_01145)	-	253099..254511 (+)	1413	WP_001916842.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HK442_RS01150 (HK442_01150)	gmd	254541..255686 (+)	1146	WP_001916841.1	GDP-mannose 4,6-dehydratase	-
HK442_RS01155 (HK442_01155)	-	255679..256611 (+)	933	WP_001916840.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37274.02 Da
• Isoelectric Point: 9.2339

>NTDB_id=444727 HK442_RS01135 WP_001916844.1 250922..251899(+) (comB9) [Helicobacter pylori strain HP9192]
MRKVLCALVGFLLVFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQKENMAENAPKDAPINNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLGIC
SKKSKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVK
KGKDE

Nucleotide

• Length: 978 bp

>NTDB_id=444727 HK442_RS01135 WP_001916844.1 250922..251899(+) (comB9) [Helicobacter pylori strain HP9192]
ATGCGTAAGGTTTTATGCGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTAAACATTGATTACTTTCAGGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATTTTAGAAAG
CAACGATCGTATTTTGCTTATCAAGCCTTTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAGTGAGGGCAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTTTGAAGCCCCAAAAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCCCATAAACAACAA
ACCATTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACCAATGCGATGA
AAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGT
TCTAAAAAATCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAA
ATTAGCACTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCG
ATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTGTGTATCCGTTTTGTTAAA
AAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	95.092	100	0.954