Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   HLV59_RS17150 Genome accession   NZ_CP053391
Coordinates   3671868..3672194 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter lactucae isolate QL-1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3666868..3677194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS17130 - 3666977..3667603 (-) 627 WP_016144131.1 FHA domain-containing protein -
  HLV59_RS17135 gspD 3667643..3669913 (-) 2271 WP_171430431.1 type II secretion system secretin GspD -
  HLV59_RS17140 - 3669955..3670791 (-) 837 WP_171430432.1 type II secretion system protein N -
  HLV59_RS17145 gspN 3670791..3671534 (-) 744 WP_125739237.1 type II secretion system protein N -
  HLV59_RS17150 hns 3671868..3672194 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  HLV59_RS17155 - 3672389..3672829 (-) 441 WP_171430433.1 thioesterase family protein -
  HLV59_RS17160 - 3672837..3674030 (-) 1194 WP_171430434.1 heme biosynthesis protein HemY -
  HLV59_RS17165 - 3674040..3674882 (-) 843 WP_171430435.1 hypothetical protein -
  HLV59_RS17170 - 3674891..3675658 (-) 768 WP_171430436.1 uroporphyrinogen-III synthase -
  HLV59_RS17175 hemC 3675662..3676579 (-) 918 WP_216606740.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=444707 HLV59_RS17150 WP_000801427.1 3671868..3672194(-) (hns) [Acinetobacter lactucae isolate QL-1]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=444707 HLV59_RS17150 WP_000801427.1 3671868..3672194(-) (hns) [Acinetobacter lactucae isolate QL-1]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGTGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTAGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1