Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   HLV59_RS16645 Genome accession   NZ_CP053391
Coordinates   3558489..3560717 (+) Length   742 a.a.
NCBI ID   WP_171430399.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate QL-1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3553489..3565717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS16620 lnt 3554008..3555567 (+) 1560 WP_016144200.1 apolipoprotein N-acyltransferase -
  HLV59_RS16625 - 3555569..3555907 (-) 339 WP_171430397.1 tRNA-binding protein -
  HLV59_RS16630 - 3556052..3556396 (-) 345 WP_171430398.1 hypothetical protein -
  HLV59_RS16635 gspG 3556665..3557114 (-) 450 WP_227513998.1 type II secretion system major pseudopilin GspG -
  HLV59_RS16640 gspF 3557135..3558340 (-) 1206 WP_005065941.1 type II secretion system inner membrane protein GspF -
  HLV59_RS16645 priA 3558489..3560717 (+) 2229 WP_171430399.1 primosomal protein N' Machinery gene
  HLV59_RS16650 - 3560794..3562638 (+) 1845 WP_031947229.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  HLV59_RS16655 - 3562802..3563677 (+) 876 WP_125699041.1 Hsp33 family molecular chaperone HslO -
  HLV59_RS16660 - 3563815..3564426 (+) 612 WP_057104864.1 LysE family translocator -
  HLV59_RS16665 - 3564573..3565529 (+) 957 WP_171430400.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83982.78 Da        Isoelectric Point: 8.6629

>NTDB_id=444704 HLV59_RS16645 WP_171430399.1 3558489..3560717(+) (priA) [Acinetobacter lactucae isolate QL-1]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAHVGSRVAISFGRQNLIGIITEKVDPSESFTGTFQLKAISDLL
DEQPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPS
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNEDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYYLVETGKLTALQLNQRAGHALLPKMH
LIDLKVVKKQHGISQPLIEKIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPEHDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEQDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQVAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=444704 HLV59_RS16645 WP_171430399.1 3558489..3560717(+) (priA) [Acinetobacter lactucae isolate QL-1]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCACGTAGGCTCACGCGTCGCCATTTCATTTGGACGCCAAAATCTGA
TTGGCATCATTACTGAAAAAGTTGACCCAAGTGAATCATTTACCGGTACCTTTCAGCTTAAAGCCATTTCTGACCTTTTA
GACGAACAGCCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCAGCTCAGTATTACCAATTTCCAATTGGTGA
GGTCATGCAAACCGCCCTACCCGCATTATTGCGTCAAGGCAAACCGATGGATGTTTTGTTCCATCTTTGGAAAATTACAC
CATGTGATAATGTTGAAGCACTTCTTAAACGTTCTGTTAAGCAACAAGACGCGTATCAAATTTTAAAGTTACACCCTTCC
GGAACTACAGAGAATATTCTTAATTTAAGTGGTGTAGAAACGGCTACGCTTAAAGCACTTCAAAAGAAAGGACTGGTAGA
CTGCACACTTGAACCGCACGACTTTAGCCCCGCACCTGTTCAATTGGCGCAAATGCCACTCACACTCAATGAAGACCAAA
AGAAGGCAACCCAGCACGTCATAAACGCGCAGCATCAATACCAAGCCTTCTTGTTAGATGGTTTAACTGGAAGTGGTAAA
ACTGAAGTTTATCTACACATCATGCACGAAGTGCTAAAGCAAGGTAAGCAAGTATTGGTTTTGGTCCCTGAAATTGGTTT
AACCCCTCAAACCATTTCTCGTTTTAAATCGCGTTTTAACTGTGATATTGCTCTATTACACTCGGGCTTAAATGACTCTA
AACGTTTACAAGCATGGCAACAGGCTCAGACTGGCAAAGCATCTATTATTTTAGGCACACGCTCTGCGATTTATACGCCA
CTACCACGTTTGGGCTTAATCATTTTAGATGAAGAACATGACCTGTCTTATAAACAGCAAGAAGGCTTCCGCTACCATGC
ACGTGATGTCGCCCTGTACCGTGGGCACTTACAAAACTGCCCTGTTATTTTAGGTTCAGCAACTCCAAGCATCGATAGTT
ATTATTTGGTCGAAACTGGCAAGTTAACAGCGCTTCAGCTTAACCAACGTGCAGGCCATGCGCTTTTACCTAAAATGCAT
TTGATTGACCTTAAAGTTGTCAAAAAACAACATGGTATTAGCCAACCTTTAATTGAAAAGATTAAAAATACCCTAGCCAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTACGCACCTGTACTGGTGTGTGAAAGCTGTGGCTGGCAAGCAA
ATTGTCCACATTGTGACGCACATTTTACTTTGCATACTCAGCCTTATTCTTATTTACATTGCCACCACTGTGGTACCGTT
CATCGCTTGCCAGACCATTGCCCTGAATGTCAGCAAAAGAGTTTAAAAACCCTAGGAGCAGGAACAGCTAAGGTCGAAGA
ACACTTACAAGAATTATTTCCCGAACACGATGTGATTCGGGTTGACCGTGACAGCACGAGTCGTGTCGGAAGCTGGCAAA
AAATTTATGATCGTATTCACCAAAACAAACCAACAATTTTGCTCGGCACTCAAATGTTGGCAAAAGGTCATCACTTCCCA
CATGTTACTTTGGTTGCTATTTTAGATATTGATGCGGGCTTATTGAGTGTCGATATTCGTGCGCCAGAACGTACTGCGCA
GTTAATTGTACAAGTCGCGGGACGTGCAGGCCGTGGCGAACATAAAGGCCATGTTTACTTACAAACCCTAAGACCAGATC
ACCCTTTACTCACCACACTCATCGAACAAGATTATCGGGCGGTTGCCAAACAGACACTTGCAGAACGTAAAGTCGCATTG
CTGCCGCCTTATCGCTATGCCGTACTGATACGTGCAGAGTCCAAAGACCGTGACTATACCTTACATTTTTTAAATGAAGC
TGCCGAGCAACTTCGTCAAGTGGCTGGTGAAATTGTTGATATTTGGGGACCTATTCCAGCCCCTATGGAGCGTAAAGCTG
GACGCTACCGCGCACATATGGTGATTTTATCTGCTGACCGTGCTCGCCTACATTTTTACTTAAGACAATGGTGGTCACAA
TTAGTTCATGCACCGCGCCAGCATCAACTCAGGCTATCAATTGATGTCGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(208-370)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.439

100

0.974