Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   HLV59_RS10280 Genome accession   NZ_CP053391
Coordinates   2214002..2214382 (-) Length   126 a.a.
NCBI ID   WP_031948175.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate QL-1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2209002..2219382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS10250 tadA 2209122..2209625 (-) 504 WP_171429903.1 tRNA adenosine(34) deaminase TadA -
  HLV59_RS10255 - 2209632..2210756 (-) 1125 WP_079748353.1 enoyl-CoA hydratase/isomerase family protein -
  HLV59_RS10260 ung 2210753..2211466 (-) 714 WP_125699501.1 uracil-DNA glycosylase -
  HLV59_RS10265 - 2211520..2212116 (-) 597 WP_016145101.1 6-carboxytetrahydropterin synthase -
  HLV59_RS10270 gspK 2212345..2213304 (-) 960 WP_171429904.1 type II secretion system minor pseudopilin GspK -
  HLV59_RS10275 xcpW 2213304..2214002 (-) 699 WP_057106322.1 type II secretion system minor pseudopilin GspJ Machinery gene
  HLV59_RS10280 xcpV 2214002..2214382 (-) 381 WP_031948175.1 type II secretion system minor pseudopilin GspI Machinery gene
  HLV59_RS10285 - 2214372..2214926 (-) 555 WP_125699504.1 type II secretion system protein -
  HLV59_RS10290 - 2214933..2215541 (-) 609 WP_014206595.1 TetR/AcrR family transcriptional regulator -
  HLV59_RS10295 - 2215578..2216351 (-) 774 WP_171429905.1 TatD family hydrolase -
  HLV59_RS10300 - 2216369..2216710 (-) 342 WP_171429906.1 PilZ domain-containing protein -
  HLV59_RS10305 - 2216721..2217701 (-) 981 WP_081174163.1 DNA polymerase III subunit delta' -
  HLV59_RS10310 kdsB 2217715..2218476 (-) 762 WP_062848588.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=444692 HLV59_RS10280 WP_031948175.1 2214002..2214382(-) (xcpV) [Acinetobacter lactucae isolate QL-1]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKIQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=444692 HLV59_RS10280 WP_031948175.1 2214002..2214382(-) (xcpV) [Acinetobacter lactucae isolate QL-1]
ATGAAATCTAAAGGTTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGCTAACTAA
AGTAGCCATGCAGTACACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAGTGGCTTGAAGGTACGCAAAGCAAGCAGGTTACTTCCCAAGGTGAAACTTGGCAGATT
GATAAATCTGCACAATCCACAATTAGCCCGAATGTTCAGAAAGTAGATTTGCAAATTAGTTTATATGATTCTGATAAAGG
GAAAATTCAAAATGGTATTACTCACTTAGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-100)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937