Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   HLV59_RS02360 Genome accession   NZ_CP053391
Coordinates   481454..482338 (+) Length   294 a.a.
NCBI ID   WP_171429252.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate QL-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 476454..487338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS02335 - 476766..478013 (-) 1248 WP_016143545.1 YihY family inner membrane protein -
  HLV59_RS02340 wrbA 478375..478983 (+) 609 WP_171429249.1 NAD(P)H:quinone oxidoreductase -
  HLV59_RS02345 - 479031..479606 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  HLV59_RS02350 - 479678..480391 (-) 714 WP_171429250.1 DUF3108 domain-containing protein -
  HLV59_RS02355 - 480550..481221 (-) 672 WP_171429251.1 hypothetical protein -
  HLV59_RS02360 tonB2 481454..482338 (+) 885 WP_171429252.1 energy transducer TonB Machinery gene
  HLV59_RS02365 ybeY 482390..482866 (-) 477 WP_171429253.1 rRNA maturation RNase YbeY -
  HLV59_RS02370 - 482876..483964 (-) 1089 WP_002119513.1 PhoH family protein -
  HLV59_RS02375 miaB 484002..485453 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33676.26 Da        Isoelectric Point: 7.2527

>NTDB_id=444685 HLV59_RS02360 WP_171429252.1 481454..482338(+) (tonB2) [Acinetobacter lactucae isolate QL-1]
MLNKRSLSIEPFHYWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGSGA
FREAHRTSSDTPNPMLNDASTGDTELESLQKIHQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAIYLEKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=444685 HLV59_RS02360 WP_171429252.1 481454..482338(+) (tonB2) [Acinetobacter lactucae isolate QL-1]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATTATTGGTGGCAAGACCGAGTCTTTATTGCTGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCCTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCACCAAGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGCTCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATTCATCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAAAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCTATGGTTGCAAGC
CTTGAAGCACAATATTTACAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATTAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCAGCTATTTATTTAGAGAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAGCAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGCTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCCAATATGAAAGATATTTCGGAGTTGCGTATTGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

89.116

100

0.891