Detailed information NTG0444637

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IVL01_RS13955
• Genome accession: NZ_CP064680
• Coordinates: 2859916..2860908 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli K-12 strain CETR1G40
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2854916..2865908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IVL01_RS13935 (IVL01_13940)	otnK	2855692..2856858 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
IVL01_RS13940 (IVL01_13945)	ygbL	2856950..2857588 (+)	639	WP_001278994.1	aldolase	-
IVL01_RS13945 (IVL01_13950)	ygbM	2857593..2858369 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
IVL01_RS13950 (IVL01_13955)	ygbN	2858458..2859822 (+)	1365	WP_000104441.1	GntP family transporter	-
IVL01_RS13955 (IVL01_13960)	rpoS	2859916..2860908 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
IVL01_RS13960 (IVL01_13965)	nlpD	2860971..2862065 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
IVL01_RS13965 (IVL01_13970)	pcm	2862250..2862876 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IVL01_RS13970 (IVL01_13975)	surE	2862870..2863631 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IVL01_RS13975 (IVL01_13980)	truD	2863612..2864661 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
IVL01_RS13980 (IVL01_13985)	ispF	2864658..2865137 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IVL01_RS13985 (IVL01_13990)	ispD	2865137..2865847 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=444637 IVL01_RS13955 WP_000081588.1 2859916..2860908(-) (rpoS) [Escherichia coli K-12 strain CETR1G40]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=444637 IVL01_RS13955 WP_000081588.1 2859916..2860908(-) (rpoS) [Escherichia coli K-12 strain CETR1G40]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715