Detailed information NTG0444516

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: HNO13_RS01965
• Genome accession: NZ_CP053377
• Coordinates: 419392..420540 (+)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain EN01
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 414392..425540

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HNO13_RS01945 (HNO13_01950)	-	414789..415472 (-)	684	WP_015388709.1	ABC transporter ATP-binding protein	-
HNO13_RS01950 (HNO13_01955)	-	415487..416923 (-)	1437	WP_024084884.1	ABC transporter permease	-
HNO13_RS01955 (HNO13_01960)	-	417136..417819 (+)	684	WP_024084885.1	response regulator transcription factor	-
HNO13_RS01960 (HNO13_01965)	-	417806..419239 (+)	1434	WP_161625271.1	HAMP domain-containing sensor histidine kinase	-
HNO13_RS01965 (HNO13_01970)	rapC	419392..420540 (+)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
HNO13_RS01970 (HNO13_01975)	phrC	420524..420643 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
HNO13_RS01975 (HNO13_01980)	-	420793..420888 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
HNO13_RS01980 (HNO13_01985)	-	420983..422347 (-)	1365	WP_003156333.1	aspartate kinase	-
HNO13_RS01985 (HNO13_01990)	ceuB	422762..423715 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
HNO13_RS01990 (HNO13_01995)	-	423705..424652 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
HNO13_RS01995 (HNO13_02000)	-	424646..425404 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=444516 HNO13_RS01965 WP_003156336.1 419392..420540(+) (rapC) [Bacillus velezensis strain EN01]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=444516 HNO13_RS01965 WP_003156336.1 419392..420540(+) (rapC) [Bacillus velezensis strain EN01]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCAGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTTTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568