Detailed information NTG0444503

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: HNO12_RS18170
• Genome accession: NZ_CP053376
• Coordinates: 3693446..3694591 (+)
• Length: 381 a.a.
• NCBI ID: WP_024085922.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain WF02
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3688446..3699591

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HNO12_RS18150 (HNO12_18200)	-	3688921..3689637 (-)	717	WP_014306017.1	Crp/Fnr family transcriptional regulator	-
HNO12_RS18155 (HNO12_18205)	narK	3689735..3690925 (-)	1191	WP_003151073.1	nitrate transporter NarK	-
HNO12_RS18160 (HNO12_18210)	argS	3691059..3692729 (-)	1671	WP_003151071.1	arginine--tRNA ligase	-
HNO12_RS18165 (HNO12_18215)	-	3692726..3693154 (-)	429	WP_003151069.1	DUF1934 family protein	-
HNO12_RS18170 (HNO12_18220)	rapF	3693446..3694591 (+)	1146	WP_024085922.1	Rap family tetratricopeptide repeat protein	Regulator
HNO12_RS18175 (HNO12_18225)	-	3694575..3694694 (+)	120	WP_131242041.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
HNO12_RS18180 (HNO12_18230)	speB	3694817..3695254 (-)	438	Protein_3552	agmatinase	-
HNO12_RS18185 (HNO12_18235)	-	3695416..3696843 (-)	1428	WP_046341451.1	DUF885 family protein	-
HNO12_RS18190 (HNO12_18240)	-	3696844..3698184 (-)	1341	WP_025853604.1	MATE family efflux transporter	-
HNO12_RS18195 (HNO12_18245)	-	3698181..3699236 (-)	1056	WP_046341452.1	SagB/ThcOx family dehydrogenase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45768.27 Da
• Isoelectric Point: 5.0694

>NTDB_id=444503 HNO12_RS18170 WP_024085922.1 3693446..3694591(+) (rapF) [Bacillus amyloliquefaciens strain WF02]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=444503 HNO12_RS18170 WP_024085922.1 3693446..3694591(+) (rapF) [Bacillus amyloliquefaciens strain WF02]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTACGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACGCAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533