Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   IVL03_RS18440 Genome accession   NZ_CP064678
Coordinates   3805252..3805920 (-) Length   222 a.a.
NCBI ID   WP_001350561.1    Uniprot ID   B1X972
Organism   Escherichia coli K-12 strain CETR3G40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3800252..3810920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVL03_RS18410 (IVL03_18415) rfaQ 3800425..3801495 (-) 1071 WP_001350560.1 lipopolysaccharide core heptosyltransferase RfaQ -
  IVL03_RS18415 (IVL03_18420) waaA 3801901..3803178 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  IVL03_RS18420 (IVL03_18425) coaD 3803186..3803665 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  IVL03_RS18425 (IVL03_18430) mutM 3803704..3804513 (-) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  IVL03_RS18430 (IVL03_18435) rpmG 3804611..3804778 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  IVL03_RS18435 (IVL03_18440) rpmB 3804799..3805035 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  IVL03_RS18440 (IVL03_18445) radC 3805252..3805920 (-) 669 WP_001350561.1 DNA repair protein RadC Machinery gene
  IVL03_RS18445 (IVL03_18450) coaBC 3806092..3807312 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  IVL03_RS18450 (IVL03_18455) dut 3807290..3807748 (+) 459 WP_000976073.1 dUTP diphosphatase -
  IVL03_RS18455 (IVL03_18460) slmA 3807855..3808451 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  IVL03_RS18460 (IVL03_18465) pyrE 3808488..3809129 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  IVL03_RS18465 (IVL03_18470) rph 3809195..3809910 (-) 716 Protein_3656 ribonuclease PH -
  IVL03_RS18470 (IVL03_18475) yicC 3810037..3810900 (+) 864 WP_000621340.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25343.46 Da        Isoelectric Point: 8.4958

>NTDB_id=444491 IVL03_RS18440 WP_001350561.1 3805252..3805920(-) (radC) [Escherichia coli K-12 strain CETR3G40]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHRRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=444491 IVL03_RS18440 WP_001350561.1 3805252..3805920(-) (radC) [Escherichia coli K-12 strain CETR3G40]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGGCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1X972

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496