Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   HNO12_RS11685 Genome accession   NZ_CP053376
Coordinates   2470572..2471372 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus amyloliquefaciens strain WF02     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2465572..2476372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO12_RS11655 (HNO12_11690) - 2466119..2466751 (+) 633 WP_014305389.1 helix-turn-helix domain-containing protein -
  HNO12_RS11660 (HNO12_11695) - 2467042..2467179 (+) 138 WP_014470646.1 hypothetical protein -
  HNO12_RS11665 (HNO12_11700) - 2467273..2468391 (+) 1119 WP_024085589.1 NADH-dependent flavin oxidoreductase -
  HNO12_RS11670 (HNO12_11705) - 2468517..2468729 (+) 213 WP_024085590.1 spore germination protein -
  HNO12_RS11675 (HNO12_11710) - 2468855..2469067 (+) 213 WP_014305392.1 spore germination protein -
  HNO12_RS11680 (HNO12_11715) alr 2469243..2470424 (+) 1182 WP_014305393.1 alanine racemase -
  HNO12_RS11685 (HNO12_11720) spo0A 2470572..2471372 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  HNO12_RS11690 (HNO12_11725) spoIVB 2471653..2472933 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  HNO12_RS11695 (HNO12_11730) recN 2473096..2474826 (-) 1731 WP_024085591.1 DNA repair protein RecN Machinery gene
  HNO12_RS11700 (HNO12_11735) argR 2474858..2475307 (-) 450 WP_003153173.1 transcriptional regulator ArgR -
  HNO12_RS11705 (HNO12_11740) - 2475404..2476249 (-) 846 WP_015388017.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=444469 HNO12_RS11685 WP_003153177.1 2470572..2471372(-) (spo0A) [Bacillus amyloliquefaciens strain WF02]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=444469 HNO12_RS11685 WP_003153177.1 2470572..2471372(-) (spo0A) [Bacillus amyloliquefaciens strain WF02]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGTGAATCAGAGCTTGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCATCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97