Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HNO12_RS07225 Genome accession   NZ_CP053376
Coordinates   1421074..1421358 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WF02     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1416074..1426358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO12_RS07205 (HNO12_07225) - 1417321..1418229 (+) 909 WP_024085247.1 ketopantoate reductase family protein -
  HNO12_RS07210 (HNO12_07230) - 1418259..1419491 (-) 1233 WP_024085248.1 aminopeptidase -
  HNO12_RS07215 (HNO12_07235) - 1419592..1419726 (-) 135 WP_003154559.1 protein YkpC -
  HNO12_RS07220 (HNO12_07240) mreBH 1419798..1420805 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  HNO12_RS07225 (HNO12_07245) abrB 1421074..1421358 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  HNO12_RS07230 (HNO12_07250) - 1421531..1422835 (+) 1305 WP_014304932.1 ATP-binding protein -
  HNO12_RS07235 (HNO12_07255) - 1422837..1423664 (+) 828 WP_024085250.1 gamma-glutamylcyclotransferase family protein -
  HNO12_RS07240 (HNO12_07260) ktrC 1423705..1424370 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  HNO12_RS07245 (HNO12_07265) ade 1424519..1426252 (+) 1734 WP_024085251.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=444462 HNO12_RS07225 WP_024085249.1 1421074..1421358(+) (abrB) [Bacillus amyloliquefaciens strain WF02]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=444462 HNO12_RS07225 WP_024085249.1 1421074..1421358(+) (abrB) [Bacillus amyloliquefaciens strain WF02]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTGATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543