Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   HNO12_RS01780 Genome accession   NZ_CP053376
Coordinates   361529..361927 (-) Length   132 a.a.
NCBI ID   WP_014304317.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WF02     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 356529..366927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO12_RS19910 - 357529..357690 (-) 162 Protein_305 hypothetical protein -
  HNO12_RS01750 (HNO12_01755) - 357807..359009 (+) 1203 WP_024084872.1 GTP-binding protein -
  HNO12_RS01755 (HNO12_01760) - 359074..360210 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  HNO12_RS01760 (HNO12_01765) - 360225..360659 (+) 435 WP_021494203.1 RDD family protein -
  HNO12_RS01765 (HNO12_01770) - 360731..361051 (+) 321 WP_015388719.1 YckD family protein -
  HNO12_RS20135 (HNO12_01775) - 361155..361238 (+) 84 WP_223151977.1 family 1 glycosylhydrolase -
  HNO12_RS01775 (HNO12_01780) - 361270..361488 (+) 219 Protein_311 family 1 glycosylhydrolase -
  HNO12_RS01780 (HNO12_01785) nin/comJ 361529..361927 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  HNO12_RS01785 (HNO12_01790) nucA/comI 361949..362386 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  HNO12_RS01790 (HNO12_01795) hxlB 362745..363302 (-) 558 WP_003156587.1 6-phospho-3-hexuloisomerase -
  HNO12_RS01795 (HNO12_01800) hxlA 363299..363934 (-) 636 WP_024084873.1 3-hexulose-6-phosphate synthase -
  HNO12_RS01800 (HNO12_01805) - 364166..364528 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15049.01 Da        Isoelectric Point: 4.6564

>NTDB_id=444438 HNO12_RS01780 WP_014304317.1 361529..361927(-) (nin/comJ) [Bacillus amyloliquefaciens strain WF02]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVFRLNTSEPVLSYEKKATVPF
EAVKDGIEIESVMSKRLFFNIPKGRYSLTCYSVPAEISDLHADTYIIDADAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=444438 HNO12_RS01780 WP_014304317.1 361529..361927(-) (nin/comJ) [Bacillus amyloliquefaciens strain WF02]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTCGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCTTCAGGCTTAACACAAGTGAACCGGTACTATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGACGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

77.519

97.727

0.758