Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   O3M_RS19915 Genome accession   NC_018650
Coordinates   3911930..3912535 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O104:H4 str. 2009EL-2050     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3906930..3917535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3M_RS19895 (O3M_19085) aes 3906967..3907926 (+) 960 WP_000801832.1 acetyl esterase -
  O3M_RS19900 (O3M_19090) hemH 3907923..3908885 (-) 963 WP_001250088.1 ferrochelatase -
  O3M_RS19905 (O3M_19095) adk 3909121..3909765 (-) 645 WP_001220233.1 adenylate kinase -
  O3M_RS19910 (O3M_19100) htpG 3909946..3911820 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  O3M_RS19915 (O3M_19105) recR 3911930..3912535 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  O3M_RS19920 (O3M_19110) ybaB 3912535..3912864 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  O3M_RS19925 (O3M_19115) dnaX 3912917..3914848 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  O3M_RS19930 (O3M_19120) apt 3914977..3915528 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  O3M_RS19935 (O3M_19125) ybaN 3915681..3916058 (-) 378 WP_001188905.1 DUF454 family protein -
  O3M_RS19940 (O3M_19130) priC 3916128..3916655 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  O3M_RS19945 (O3M_19135) rsmS 3916669..3916830 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  O3M_RS32745 - 3916883..3916981 (-) 99 Protein_3830 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=44435 O3M_RS19915 WP_001195025.1 3911930..3912535(-) (recR) [Escherichia coli O104:H4 str. 2009EL-2050]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=44435 O3M_RS19915 WP_001195025.1 3911930..3912535(-) (recR) [Escherichia coli O104:H4 str. 2009EL-2050]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment