Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HLK66_RS22865 Genome accession   NZ_CP053315
Coordinates   4690587..4692344 (-) Length   585 a.a.
NCBI ID   WP_171510132.1    Uniprot ID   -
Organism   Niallia circulans strain GN03     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4685587..4697344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLK66_RS22845 (HLK66_22855) - 4686463..4687323 (+) 861 WP_061799543.1 MerR family transcriptional regulator -
  HLK66_RS22850 (HLK66_22860) - 4687622..4688026 (+) 405 WP_061799545.1 VOC family protein -
  HLK66_RS22855 (HLK66_22865) - 4688173..4688676 (-) 504 WP_171510131.1 MarR family transcriptional regulator -
  HLK66_RS22860 (HLK66_22870) rcrQ 4688753..4690516 (-) 1764 WP_249937959.1 ABC transporter ATP-binding protein Regulator
  HLK66_RS22865 (HLK66_22875) rcrP 4690587..4692344 (-) 1758 WP_171510132.1 ABC transporter ATP-binding protein Regulator
  HLK66_RS22870 (HLK66_22880) - 4692499..4693056 (-) 558 WP_171510133.1 thioredoxin family protein -
  HLK66_RS22875 (HLK66_22885) - 4693223..4694287 (+) 1065 WP_171510134.1 hypothetical protein -
  HLK66_RS22880 (HLK66_22890) - 4695106..4696440 (-) 1335 WP_171510135.1 sulfatase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64966.84 Da        Isoelectric Point: 5.8569

>NTDB_id=444089 HLK66_RS22865 WP_171510132.1 4690587..4692344(-) (rcrP) [Niallia circulans strain GN03]
MINIFKNFQKKDWMFISCALVFIILQVWLDLKLPDYMSEITRLVQTEGSELSDVLAQGGFMMLCAIGSMVASIITVFFAA
KVAAGFSNRLRKKVFDKTLSFSMEELSGFSTASLITRSTNDIMQVQMLIILSLQIVIKAPIIAVWGILKITGKSWEWTAA
TGVAIAVLLVLIATIVLVALPKFKVIQKLTDNLNMVTREHLNGIRVVHAYNAANYHEEKFEKANKELTDTNLFTSRIMAL
MMPTISLIMSGMTLAIYWIGAVLINNAAMADRLPIFSDMVVFSSYAMQIIMAFMMVSITFVLLPRAAVSIKRINEVLNTD
VKIKSGSKTDGDKIGEIEFRDVSFKYPGASDYILRNISFTASKGETVAIIGSTGSGKSTLLNLIPRFMEATEGEILVDGL
NVKDYKLEALRDKIGYVSQKAVMFSGSVSSNITFGEEDKDSVEQTKIQRAVEIAQGKDFIEKMDQQYEATISQGGTNLSG
GQKQRLSIARAIYKDPEVYLFDDSFSALDYKTDRVLRSKLKEEIHDATNIIVAQRIGTIKDADRILVLDKGEVVGMGTHD
ELMVTCEVYQEIALSQLSKEELEIG

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=444089 HLK66_RS22865 WP_171510132.1 4690587..4692344(-) (rcrP) [Niallia circulans strain GN03]
ATGATAAATATTTTTAAAAACTTTCAAAAAAAGGACTGGATGTTCATTTCATGTGCATTAGTCTTTATTATTTTACAAGT
ATGGCTTGATTTAAAGCTGCCGGATTATATGTCTGAAATCACAAGACTAGTGCAGACAGAGGGAAGTGAGTTAAGCGACG
TTTTAGCTCAAGGCGGATTTATGATGCTTTGTGCAATCGGAAGTATGGTTGCTTCGATTATCACGGTTTTCTTTGCTGCG
AAAGTGGCCGCAGGCTTTTCGAATCGTCTGCGCAAAAAGGTTTTTGATAAGACATTATCTTTTTCGATGGAAGAGCTGTC
TGGTTTTTCAACAGCTAGCTTAATAACTCGTTCGACAAATGATATTATGCAAGTTCAAATGCTGATTATATTAAGCTTAC
AAATTGTTATTAAAGCACCAATCATTGCCGTGTGGGGAATTTTAAAAATTACCGGGAAAAGCTGGGAATGGACCGCTGCT
ACAGGCGTGGCGATTGCGGTGTTATTAGTGCTGATTGCTACGATTGTGTTAGTTGCTCTTCCAAAATTCAAAGTTATCCA
GAAGTTAACGGATAATCTTAACATGGTAACAAGAGAGCATTTAAACGGAATCCGGGTTGTTCATGCTTATAATGCAGCAA
ACTATCATGAGGAAAAATTTGAGAAAGCAAATAAGGAATTAACGGATACAAATTTATTCACTTCTCGAATCATGGCCCTG
ATGATGCCGACGATTTCCCTGATAATGTCGGGGATGACGCTTGCCATCTATTGGATTGGAGCAGTGTTAATCAATAATGC
GGCAATGGCAGACCGCTTGCCAATATTCTCAGATATGGTTGTCTTTTCTTCCTATGCGATGCAAATCATTATGGCGTTTA
TGATGGTTTCCATTACATTTGTTCTTCTTCCTCGTGCGGCAGTTTCGATTAAGAGAATAAACGAAGTCCTGAATACCGAT
GTGAAAATTAAGAGTGGTTCGAAAACAGATGGAGACAAGATAGGGGAGATTGAATTTCGCGATGTGAGCTTTAAATACCC
TGGTGCGAGTGATTATATTCTCCGAAATATTAGCTTTACTGCTTCTAAAGGGGAGACTGTTGCGATTATTGGTTCTACTG
GGAGCGGAAAAAGTACTTTGTTGAACTTGATACCTCGCTTTATGGAAGCAACCGAGGGCGAAATTTTGGTAGATGGTCTA
AATGTGAAGGATTATAAGCTAGAAGCATTACGAGACAAAATTGGATATGTATCGCAAAAAGCAGTTATGTTCAGTGGCTC
TGTGTCTTCCAACATTACGTTTGGAGAGGAAGATAAGGATTCAGTGGAACAAACAAAAATCCAACGAGCAGTAGAAATTG
CGCAAGGAAAAGACTTTATTGAAAAAATGGATCAGCAATATGAGGCGACGATTTCACAAGGTGGAACCAATCTTTCTGGT
GGACAGAAACAAAGATTATCGATTGCACGTGCCATTTATAAAGATCCAGAAGTCTATTTATTTGATGATTCTTTTTCCGC
GTTGGACTATAAAACAGATCGTGTCCTCCGCTCTAAACTGAAAGAAGAGATCCATGATGCCACTAATATTATTGTGGCAC
AGCGAATTGGAACAATTAAGGATGCTGACCGCATTCTGGTATTAGATAAAGGCGAAGTGGTTGGAATGGGTACACATGAC
GAGTTGATGGTAACTTGCGAAGTTTATCAAGAAATTGCCTTATCACAATTATCAAAGGAGGAACTCGAAATTGGCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(354-504)

ABC transporter transmembrane region (ABC_membrane)

(18-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.252

100

0.525