Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HLK66_RS22860 Genome accession   NZ_CP053315
Coordinates   4688753..4690516 (-) Length   587 a.a.
NCBI ID   WP_249937959.1    Uniprot ID   -
Organism   Niallia circulans strain GN03     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4683753..4695516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLK66_RS22830 (HLK66_22840) - 4684331..4684699 (-) 369 WP_171510129.1 HIT family protein -
  HLK66_RS22835 (HLK66_22845) - 4684775..4685125 (-) 351 WP_171510130.1 DUF4304 domain-containing protein -
  HLK66_RS22840 (HLK66_22850) - 4685279..4686442 (+) 1164 WP_095258164.1 MFS transporter -
  HLK66_RS22845 (HLK66_22855) - 4686463..4687323 (+) 861 WP_061799543.1 MerR family transcriptional regulator -
  HLK66_RS22850 (HLK66_22860) - 4687622..4688026 (+) 405 WP_061799545.1 VOC family protein -
  HLK66_RS22855 (HLK66_22865) - 4688173..4688676 (-) 504 WP_171510131.1 MarR family transcriptional regulator -
  HLK66_RS22860 (HLK66_22870) rcrQ 4688753..4690516 (-) 1764 WP_249937959.1 ABC transporter ATP-binding protein Regulator
  HLK66_RS22865 (HLK66_22875) rcrP 4690587..4692344 (-) 1758 WP_171510132.1 ABC transporter ATP-binding protein Regulator
  HLK66_RS22870 (HLK66_22880) - 4692499..4693056 (-) 558 WP_171510133.1 thioredoxin family protein -
  HLK66_RS22875 (HLK66_22885) - 4693223..4694287 (+) 1065 WP_171510134.1 hypothetical protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65199.65 Da        Isoelectric Point: 5.0443

>NTDB_id=444088 HLK66_RS22860 WP_249937959.1 4688753..4690516(-) (rcrQ) [Niallia circulans strain GN03]
MPPRPKGMNVSSLKQLVVYCKAYFPIIIFALILAMTAAIFSIIGPDQLSKMTDYITAGLMGEIDLDAVYDVAILLVFLYG
LGFIFNYVQGYIMATVTQRISKQLRRDISVKINRLPLKYFDNTTTGDVLSRVTNDVDMVGQTMNQSISSLITAITMFVGS
LIMMFYTNWIMAISAILSTFIGFAFMFFIISKSQKYFAQQQQELGKLNGHIEEIYSGHNVVKAYNAEQQAKDDFFAINTR
LYESAWKSQFMSGLMMPLMMFIGNFGYVVVCIVGAALAVNGHISFGVIVAFMLYIRLFTQPLQQIAQAATNLQSTAAASG
RVFEFLSEEELAVEDEKTAKLANIKGDVEFKHVRFGYSEDKTIIEDFSVQVAAGQKVAIVGPTGAGKTTLINLLMRFYEI
NGGEITIDGIPTNEMTREALHDLFCMVLQDTWIFEGSIRDNIVYSREGVSDEEVEAACKAVGLHHFIKTLPNGYDTILDD
KTSLSAGQKQLITIARAMVKMAPLLILDEATSSVDTRTELLIQTAMDKLTEGKTSFVIAHRLSTIKNADLILVMKDGDII
EAGTHKELIAKNGFYAELYNSQFEEAS

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=444088 HLK66_RS22860 WP_249937959.1 4688753..4690516(-) (rcrQ) [Niallia circulans strain GN03]
ATTCCTCCGCGTCCAAAAGGGATGAATGTTTCCAGTTTAAAGCAATTGGTTGTTTACTGTAAAGCTTATTTTCCGATTAT
CATCTTTGCCTTAATTCTTGCGATGACAGCGGCAATCTTTAGCATTATCGGTCCCGACCAGCTAAGCAAAATGACGGATT
ATATTACAGCAGGACTGATGGGAGAAATTGATCTAGATGCTGTATATGATGTAGCGATTCTGCTGGTTTTCCTATACGGT
TTAGGCTTTATTTTTAACTATGTGCAAGGCTATATTATGGCAACTGTCACCCAGAGAATTTCAAAACAATTAAGAAGAGA
CATTTCAGTAAAAATTAATCGTCTGCCTTTAAAGTATTTTGATAATACAACAACAGGTGATGTCCTTAGTCGGGTTACAA
ATGATGTCGATATGGTGGGACAGACGATGAACCAAAGTATTAGCAGCTTAATTACGGCTATTACTATGTTCGTCGGTTCC
CTAATCATGATGTTCTATACAAACTGGATTATGGCAATCTCAGCGATTCTTTCTACCTTTATTGGTTTTGCGTTTATGTT
CTTTATTATTTCGAAATCACAGAAATACTTCGCTCAACAGCAGCAAGAGCTTGGAAAATTAAATGGTCATATTGAAGAAA
TCTATTCTGGCCATAATGTCGTGAAAGCTTATAATGCAGAGCAGCAGGCGAAGGATGACTTTTTTGCTATCAATACACGA
CTATATGAGAGTGCATGGAAATCACAATTTATGTCAGGGCTGATGATGCCATTAATGATGTTTATTGGAAACTTTGGTTA
TGTGGTTGTATGTATTGTCGGGGCAGCTCTTGCCGTAAATGGCCATATTTCATTTGGTGTTATTGTTGCCTTTATGCTGT
ACATTCGCTTATTTACTCAGCCGCTGCAACAAATTGCGCAAGCAGCGACAAATCTGCAATCCACAGCAGCAGCAAGTGGG
CGTGTGTTTGAGTTCTTGTCCGAAGAAGAACTAGCAGTAGAGGATGAGAAAACAGCAAAATTGGCAAATATCAAAGGTGA
TGTGGAATTTAAGCATGTCCGCTTTGGCTACAGCGAAGATAAAACGATTATTGAAGACTTTTCCGTACAAGTGGCCGCTG
GTCAGAAGGTCGCAATCGTAGGCCCGACTGGCGCTGGAAAAACAACATTAATTAATTTGCTGATGCGCTTTTATGAAATA
AATGGCGGCGAGATCACAATTGACGGGATTCCAACCAACGAAATGACAAGAGAGGCCCTGCATGATCTTTTCTGTATGGT
GCTGCAAGATACATGGATATTTGAAGGGTCTATTCGCGACAATATCGTCTATTCAAGAGAAGGAGTATCAGATGAAGAGG
TAGAAGCTGCCTGCAAAGCAGTTGGATTGCATCATTTTATCAAAACATTGCCAAACGGCTATGATACTATCTTGGATGAC
AAAACAAGTTTATCAGCAGGTCAAAAACAGCTTATCACCATCGCACGTGCCATGGTAAAAATGGCACCATTACTTATCCT
GGATGAAGCGACTAGCTCCGTGGATACGCGTACAGAATTACTGATCCAAACAGCCATGGATAAGCTGACAGAAGGGAAAA
CTTCCTTTGTGATCGCCCATCGACTTTCCACGATTAAGAATGCCGACTTAATTCTCGTTATGAAAGACGGCGATATTATC
GAAGCCGGAACACATAAAGAATTAATCGCGAAAAATGGATTTTATGCTGAGCTTTATAATAGCCAGTTTGAAGAGGCATC
GTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(365-512)

ABC transporter transmembrane region (ABC_membrane)

(27-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.957

97.956

0.578